Browse Element(s) Details


Os.39035.1.S1_at

Description gb:BI804484
DB_XREF= gi:16577188
DB_XREF=H138B07
CLONE=H138B07
TID=Os.39035.1
CNT=2
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.39035 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequences
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4239011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g42354OsAffx.28872.1.S1_at10/117+25331784..25337035hypothetical protein
LOC_Os07g42354Os.51960.1.S1_at2/117+25331784..25337035hypothetical protein
LOC_Os07g42370Os.12710.1.S1_at11/117+25346313..25350115ZIM motif family protein, expressed
LOC_Os07g42370OsAffx.24973.1.S1_at1/117+25346313..25350115ZIM motif family protein, expressed
LOC_Os07g42380Os.22918.1.S1_a_at11/117+25356146..25361071RNA recognition motif family protein, expressed
LOC_Os07g42390Os.26610.1.S1_x_at11/117+25361878..25363843expressed protein
LOC_Os07g42390Os.39035.1.S1_at11/117+25361878..25363843expressed protein
LOC_Os07g42390Os.26610.2.S1_s_at11/117+25361878..25363843expressed protein
LOC_Os07g42390Os.26610.1.S1_at11/117+25361878..25363843expressed protein
LOC_Os07g42390Os.26610.1.S1_a_at8/117+25361878..25363843expressed protein
LOC_Os07g42400Os.13876.1.S1_at11/117+25370351..25374431transposon protein, putative, unclassified, expressed
LOC_Os07g42400Os.13876.2.S1_x_at11/117+25370351..25374431transposon protein, putative, unclassified, expressed
LOC_Os07g42400Os.13876.1.S1_a_at11/117+25370351..25374431transposon protein, putative, unclassified, expressed
LOC_Os07g42400OsAffx.8612.1.S1_at1/117+25370351..25374431transposon protein, putative, unclassified, expressed
LOC_Os07g42410Os.8811.1.S1_at11/117+25380003..25387837expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.39035.1.S1_at--136--6591Chr07:25363773..25363797 (25 bp)
GTTGGGCGAAGGTGATTTTCGTCCA
LOC_Os07g42390
Os.39035.1.S1_at--503--10691Chr07:25363772..25363796 (25 bp)
TTGGGCGAAGGTGATTTTCGTCCAA
LOC_Os07g42390
Os.39035.1.S1_at--647--8651Chr07:25363771..25363795 (25 bp)
TGGGCGAAGGTGATTTTCGTCCAAC
LOC_Os07g42390
Os.39035.1.S1_at--269--7571Chr07:25363770..25363794 (25 bp)
GGGCGAAGGTGATTTTCGTCCAACA
LOC_Os07g42390
Os.39035.1.S1_at--816--8371Chr07:25363769..25363793 (25 bp)
GGCGAAGGTGATTTTCGTCCAACAA
LOC_Os07g42390
Os.39035.1.S1_at--375--4591Chr07:25363768..25363792 (25 bp)
GCGAAGGTGATTTTCGTCCAACAAG
LOC_Os07g42390
Os.39035.1.S1_at--1080--5311Chr07:25363766..25363790 (25 bp)
GAAGGTGATTTTCGTCCAACAAGAA
LOC_Os07g42390
Os.39035.1.S1_at--437--2891Chr07:25363765..25363789 (25 bp)
AAGGTGATTTTCGTCCAACAAGAAG
LOC_Os07g42390
Os.39035.1.S1_at--356--1051Chr07:25363764..25363788 (25 bp)
AGGTGATTTTCGTCCAACAAGAAGT
LOC_Os07g42390
Os.39035.1.S1_at--10--7751Chr07:25363763..25363787 (25 bp)
GGTGATTTTCGTCCAACAAGAAGTG
LOC_Os07g42390
Os.39035.1.S1_at--374--7411Chr07:25363762..25363786 (25 bp)
GTGATTTTCGTCCAACAAGAAGTGT
LOC_Os07g42390
Target Sequence 
GTTGGGCGAAGGTGATTTTCGTCCAACAAGAAGTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.39035.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis