Browse Element(s) Details


Os.13876.2.S1_x_at

Description gb:AK073803.1
DB_XREF= gi:32983826
TID=Os.13876.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.13876 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) transposase-like (B1056G08.6), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033068D01, full insert sequence.
FL= gb:AK073803.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4240011/11transposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g42370Os.12710.1.S1_at11/117+25346313..25350115ZIM motif family protein, expressed
LOC_Os07g42370OsAffx.24973.1.S1_at1/117+25346313..25350115ZIM motif family protein, expressed
LOC_Os07g42380Os.22918.1.S1_a_at11/117+25356146..25361071RNA recognition motif family protein, expressed
LOC_Os07g42390Os.26610.1.S1_x_at11/117+25361878..25363843expressed protein
LOC_Os07g42390Os.39035.1.S1_at11/117+25361878..25363843expressed protein
LOC_Os07g42390Os.26610.2.S1_s_at11/117+25361878..25363843expressed protein
LOC_Os07g42390Os.26610.1.S1_at11/117+25361878..25363843expressed protein
LOC_Os07g42390Os.26610.1.S1_a_at8/117+25361878..25363843expressed protein
LOC_Os07g42400Os.13876.1.S1_at11/117+25370351..25374431transposon protein, putative, unclassified, expressed
LOC_Os07g42400Os.13876.2.S1_x_at11/117+25370351..25374431transposon protein, putative, unclassified, expressed
LOC_Os07g42400Os.13876.1.S1_a_at11/117+25370351..25374431transposon protein, putative, unclassified, expressed
LOC_Os07g42400OsAffx.8612.1.S1_at1/117+25370351..25374431transposon protein, putative, unclassified, expressed
LOC_Os07g42410Os.8811.1.S1_at11/117+25380003..25387837expressed protein
LOC_Os07g42420Os.37967.1.S1_at11/117+25391329..253969053-oxoacyl-synthase I, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.13876.2.S1_x_at--1161--7011Chr07:25372820..25372844 (25 bp)
GTACAAAGTCGCTCCCTCTGAAAAA
LOC_Os07g42400
Os.13876.2.S1_x_at--212--6531Chr07:25372864..25372888 (25 bp)
GATTTGACTCGAGTGACTGCTCCTG
LOC_Os07g42400
Os.13876.2.S1_x_at--271--1991Chr07:25372879..25372903 (25 bp)
ACTGCTCCTGTATCTGCACTTGTAG
LOC_Os07g42400
Os.13876.2.S1_x_at--773--8631Chr07:25372918..25372942 (25 bp)
TGGGTATTCCATGTTGCCATATGTT
LOC_Os07g42400
Os.13876.2.S1_x_at--114--5371Chr07:25373028..25373228 (25 bp)
GAAGAAAACCAAGGGACACTCCTGT
LOC_Os07g42400
Os.13876.2.S1_x_at--183--8151Chr07:25373217..25373241 (25 bp)
GGACACTCCTGTTTCTAATATGCAT
LOC_Os07g42400
Os.13876.2.S1_x_at--1081--2391Chr07:25373609..25373633 (25 bp)
AAACATTATTCCTTCTGCACGGTGC
LOC_Os07g42400
Os.13876.2.S1_x_at--122--3831Chr07:25373634..25373658 (25 bp)
CTGCTCCACGATACTGGCGTTGAAG
LOC_Os07g42400
Os.13876.2.S1_x_at--596--951Chr07:25373725..25373749 (25 bp)
AGGAAATCCCAGCTATTGAGGCGCC
LOC_Os07g42400
Os.13876.2.S1_x_at--340--2271Chr07:25373786..25373810 (25 bp)
AAATCATATGATTGTGCTGCCCACC
LOC_Os07g42400
Os.13876.2.S1_x_at--978--1151Chr07:25373844..25373868 (25 bp)
AGTCTATTTATCCTAGCCCATTCAT
LOC_Os07g42400
Target Sequence 
GTACAAAGTCGCTCCCTCTGAAAAACCCAAGGAACATTTTGTTAGATTTGACTCGAGTGACTGCTCCTGTATCTGCACTT
GTAGGAAGTTTGAGTTTATGGGTATTCCATGTTGCCATATGTTGAAGGTGCTCGATTACAGAAATATCAAAGAATTACCT
CAGAGATATCTGTTGAAGCGATGGAGAAGGACTGCCAAGTCTGCAAATGAAGAAAACCAAGGGACACTCCTGTTTCTAAT
ATGCATGAGAATTCATTTCGCAGAAGCTCATGATGCAGGTGACTTGAATCTAAACATTATTCCTTCTGCACGGTGCCTGC
TCCACGATACTGGCGTTGAAGCAGTGAGAACAGGCCATGCGGAGCTCCCCCGAATAAAAGTTTCCAACTTGTAAATTATG
CAGCTGTAGGAAATCCCAGCTATTGAGGCGCCCATCCTACTTAGGCTCTTAGACTAGATTCTGGTATGAAATCATATGAT
TGTGCTGCCCACCTGCACCCAGGGAAATTTTGTGCATTCTGTAAACAGTCTATTTATCCTAGCCCATTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.13876.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis