Browse Element(s) Details


Os.26610.2.S1_s_at

Description gb:BI801951
DB_XREF= gi:16574655
DB_XREF=H066A04
CLONE=H066A04
TID=Os.26610.2
CNT=6
FEA=EST
TIER=Stack
STK=6
UG=Os.26610 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) contains EST AU069911(E12068)~unknown protein (B1056G08.1), mRNA
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4239011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g42354OsAffx.28872.1.S1_at10/117+25331784..25337035hypothetical protein
LOC_Os07g42354Os.51960.1.S1_at2/117+25331784..25337035hypothetical protein
LOC_Os07g42370Os.12710.1.S1_at11/117+25346313..25350115ZIM motif family protein, expressed
LOC_Os07g42370OsAffx.24973.1.S1_at1/117+25346313..25350115ZIM motif family protein, expressed
LOC_Os07g42380Os.22918.1.S1_a_at11/117+25356146..25361071RNA recognition motif family protein, expressed
LOC_Os07g42390Os.26610.1.S1_x_at11/117+25361878..25363843expressed protein
LOC_Os07g42390Os.39035.1.S1_at11/117+25361878..25363843expressed protein
LOC_Os07g42390Os.26610.2.S1_s_at11/117+25361878..25363843expressed protein
LOC_Os07g42390Os.26610.1.S1_at11/117+25361878..25363843expressed protein
LOC_Os07g42390Os.26610.1.S1_a_at8/117+25361878..25363843expressed protein
LOC_Os07g42400Os.13876.1.S1_at11/117+25370351..25374431transposon protein, putative, unclassified, expressed
LOC_Os07g42400Os.13876.2.S1_x_at11/117+25370351..25374431transposon protein, putative, unclassified, expressed
LOC_Os07g42400Os.13876.1.S1_a_at11/117+25370351..25374431transposon protein, putative, unclassified, expressed
LOC_Os07g42400OsAffx.8612.1.S1_at1/117+25370351..25374431transposon protein, putative, unclassified, expressed
LOC_Os07g42410Os.8811.1.S1_at11/117+25380003..25387837expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.26610.2.S1_s_at--690--9151Chr07:25362074..25362098 (25 bp)
TGCGCCGACGACCTGTGAAGAATGT
LOC_Os07g42390
Os.26610.2.S1_s_at--44--4171Chr07:25362072..25362096 (25 bp)
CGCCGACGACCTGTGAAGAATGTGA
LOC_Os07g42390
Os.26610.2.S1_s_at--314--7951Chr07:25362046..25362070 (25 bp)
GGATATGATGCATCATGCGTGCATT
LOC_Os07g42390
Os.26610.2.S1_s_at--1158--9051Chr07:25362038..25362062 (25 bp)
TGCATCATGCGTGCATTGCATGGCG
LOC_Os07g42390
Os.26610.2.S1_s_at--632--411Chr07:25362035..25362059 (25 bp)
ATCATGCGTGCATTGCATGGCGGAT
LOC_Os07g42390
Os.26610.2.S1_s_at--296--9151Chr07:25362031..25362055 (25 bp)
TGCGTGCATTGCATGGCGGATGATA
LOC_Os07g42390
Os.26610.2.S1_s_at--222--4011Chr07:25362029..25362053 (25 bp)
CGTGCATTGCATGGCGGATGATAAT
LOC_Os07g42390
Os.26610.2.S1_s_at--138--5011Chr07:25362021..25362045 (25 bp)
GCATGGCGGATGATAATCGGAGCTT
LOC_Os07g42390
Os.26610.2.S1_s_at--794--7991Chr07:25362014..25362038 (25 bp)
GGATGATAATCGGAGCTTGGCTGTA
LOC_Os07g42390
Os.26610.2.S1_s_at--1079--711Chr07:25362012..25362036 (25 bp)
ATGATAATCGGAGCTTGGCTGTAAT
LOC_Os07g42390
Os.26610.2.S1_s_at--701--231Chr07:25361951..25361975 (25 bp)
ATATACTTAGTGTACTGTAATGAGG
LOC_Os07g42390
Target Sequence 
TGCGCCGACGACCTGTGAAGAATGTGATGGATATGATGCATCATGCGTGCATTGCATGGCGGATGATAATCGGAGCTTGG
CTGTAATAATAATCGATCTCCACCATAATATAATACANTAGTAATATACTTAGTGTACTGTAATGAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.26610.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis