Browse Element(s) Details


OsAffx.8612.1.S1_at

Description gb:XM_354474.1
DB_XREF= gi:35191717
GEN=B1056G08.7
TID=OsAffx.8612.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group).
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g424001/11transposon protein, putative, unclassified, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g42370Os.12710.1.S1_at11/117+25346313..25350115ZIM motif family protein, expressed
LOC_Os07g42370OsAffx.24973.1.S1_at1/117+25346313..25350115ZIM motif family protein, expressed
LOC_Os07g42380Os.22918.1.S1_a_at11/117+25356146..25361071RNA recognition motif family protein, expressed
LOC_Os07g42390Os.26610.1.S1_x_at11/117+25361878..25363843expressed protein
LOC_Os07g42390Os.39035.1.S1_at11/117+25361878..25363843expressed protein
LOC_Os07g42390Os.26610.2.S1_s_at11/117+25361878..25363843expressed protein
LOC_Os07g42390Os.26610.1.S1_at11/117+25361878..25363843expressed protein
LOC_Os07g42390Os.26610.1.S1_a_at8/117+25361878..25363843expressed protein
LOC_Os07g42400Os.13876.1.S1_at11/117+25370351..25374431transposon protein, putative, unclassified, expressed
LOC_Os07g42400Os.13876.2.S1_x_at11/117+25370351..25374431transposon protein, putative, unclassified, expressed
LOC_Os07g42400Os.13876.1.S1_a_at11/117+25370351..25374431transposon protein, putative, unclassified, expressed
LOC_Os07g42400OsAffx.8612.1.S1_at1/117+25370351..25374431transposon protein, putative, unclassified, expressed
LOC_Os07g42410Os.8811.1.S1_at11/117+25380003..25387837expressed protein
LOC_Os07g42420Os.37967.1.S1_at11/117+25391329..253969053-oxoacyl-synthase I, chloroplast precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.8612.1.S1_at--139--7271Chr07:25374281..25374302 (22 bp)
GTCCTTGAAAAACACATTCGAGCTT
LOC_Os07g42400
OsAffx.8612.1.S1_at--640--2471NONE
AACACATTCGAGCTTCAGTCTGAAG
NONE
OsAffx.8612.1.S1_at--278--4911Chr07:25375575..25375599 (25 bp)
GCTTCAGTCTGAAGGTGTGATGAAA
NONE
OsAffx.8612.1.S1_at--355--6311Chr07:25375593..25375617 (25 bp)
GATGAAAATTCAGGAGCCGTCACAT
NONE
OsAffx.8612.1.S1_at--284--8091Chr07:25375605..25375629 (25 bp)
GGAGCCGTCACATTTGATCCCGGTC
NONE
OsAffx.8612.1.S1_at--8--7071Chr07:25375611..25375635 (25 bp)
GTCACATTTGATCCCGGTCGTTGGT
NONE
OsAffx.8612.1.S1_at--116--10771Chr07:25375618..25375642 (25 bp)
TTGATCCCGGTCGTTGGTCGGTCAA
NONE
OsAffx.8612.1.S1_at--337--7211Chr07:25375627..25375651 (25 bp)
GTCGTTGGTCGGTCAATCTTCGTCA
NONE
OsAffx.8612.1.S1_at--1124--7071Chr07:25375638..25375662 (25 bp)
GTCAATCTTCGTCACTGCGATTCAA
NONE
OsAffx.8612.1.S1_at--484--9151Chr07:25375653..25375677 (25 bp)
TGCGATTCAAAACAAGCACCATCTG
NONE
OsAffx.8612.1.S1_at--545--3231Chr07:25375665..25375689 (25 bp)
CAAGCACCATCTGATTATTTCTGCA
NONE
Target Sequence 
GTCCTTGAAAAACACATTCGAGCTTCAGTCTGAAGGTGTGATGAAAATTCAGGAGCCGTCACATTTGATCCCGGTCGTTG
GTCGGTCAATCTTCGTCACTGCGATTCAAAACAAGCACCATCTGATTATTTCTGCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.8612.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis