Browse Element(s) Details


Os.49749.1.S1_at

Description gb:AK070908.1
DB_XREF= gi:32980931
TID=Os.49749.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49749 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023064I21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023064I21, full insert sequence.
FL= gb:AK070908.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4009011/11Zinc finger, ZZ type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g40050Os.54130.1.S1_at3/114+23624499..23628458expressed protein
LOC_Os04g40060Os.6193.1.S1_at11/114+23630254..23634837transposon protein, putative, unclassified, expressed
LOC_Os04g40070OsAffx.4035.1.S1_x_at11/114+23640224..23644135C2 domain-containing protein, putative, expressed
LOC_Os04g40070Os.49734.1.A1_at11/114+23640224..23644135C2 domain-containing protein, putative, expressed
LOC_Os04g40080Os.6250.1.S1_at11/114+23645064..23648120Leucine Rich Repeat family protein, expressed
LOC_Os04g40090Os.49749.1.S1_at11/114+23648459..23652978Zinc finger, ZZ type family protein, expressed
LOC_Os04g40100Os.21022.1.S1_at10/114+23657229..23659836NPH3 family protein, expressed
LOC_Os04g40110OsAffx.26401.1.S1_at11/114+23661918..23662253hypothetical protein
LOC_Os04g40120NANA4+23662749..23663234hypothetical protein
LOC_Os04g40130Os.51821.1.S1_at11/114+23663563..23666129Rf1 protein, mitochondrial precursor, putative, expressed
LOC_Os04g40140Os.23932.1.A1_at11/114+23666492..23670448expressed protein
LOC_Os04g40140Os.11595.2.S1_at1/114+23666492..23670448expressed protein
LOC_Os04g40150Os.12301.1.S1_at11/114+23673726..23677378glycosyl transferase family 17 protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0005737cellular_componentcytoplasm
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49749.1.S1_at--471--6451Chr04:23649054..23649078 (25 bp)
GATCACATCAGTGCCGTGGAGGACA
LOC_Os04g40090
Os.49749.1.S1_at--311--4911Chr04:23649002..23649026 (25 bp)
GCTTCGGGCAAGTCGACCTGAACAA
LOC_Os04g40090
Os.49749.1.S1_at--775--8071Chr04:23648947..23648971 (25 bp)
GGAGCAGTCCATTGATGAACTCTGT
LOC_Os04g40090
Os.49749.1.S1_at--66--8991Chr04:23648932..23648956 (25 bp)
TGAACTCTGTGGCATCCTCGAATGG
LOC_Os04g40090
Os.49749.1.S1_at--897--8631Chr04:23648910..23648934 (25 bp)
TGGGATGCACTCCATGATGAACTGC
LOC_Os04g40090
Os.49749.1.S1_at--382--5471Chr04:23648802..23648916 (25 bp)
GAACTGCACGAACTGGGCATCTGAT
LOC_Os04g40090
Os.49749.1.S1_at--803--1531Chr04:23648735..23648759 (25 bp)
AGCATGTGGCCGTGAATCTTTTTTG
LOC_Os04g40090
Os.49749.1.S1_at--678--1751Chr04:23648686..23648710 (25 bp)
ACCTCGTCGTGTTCAGCTATTGAGC
LOC_Os04g40090
Os.49749.1.S1_at--1160--4871Chr04:23648671..23648695 (25 bp)
GCTATTGAGCACCTTGCAGTATCCA
LOC_Os04g40090
Os.49749.1.S1_at--239--9851Chr04:23648574..23648598 (25 bp)
TACTCGCCAGCAACCTTAGAGGGTC
LOC_Os04g40090
Os.49749.1.S1_at--1060--2331Chr04:23648524..23648548 (25 bp)
AAAGACTTCTAATCATCGGTGTGTA
LOC_Os04g40090
Target Sequence 
GATCACATCAGTGCCGTGGAGGACAACATGCTGAGAGAGCTGGGGCAGATGGGCTTCGGGCAAGTCGACCTGAACAAGGA
AATAATTAGGCGGAACGAGTACAACCTGGAGCAGTCCATTGATGAACTCTGTGGCATCCTCGAATGGGATGCACTCCATG
ATGAACTGCACGAACTGGGCATCTGATCAGAACGGAGATGAACAAGGCGCTCACCAAGGACGGCGAGGAAGCATGTGGCC
GTGAATCTTTTTTGCCCCTCCTAGAANGGCCAGTGATGACCTCGTCGTGTTCAGCTATTGAGCACCTTGCAGTATCCAAG
ATATAGACCGTAGTATATTTATAAATAGCTTACCTAGTTAAAAGCGGCGTTCGTGCTGCTGTGCTACCCCTACTCGCCAG
CAACCTTAGAGGGTCTGGTGTAGTGCCAGTAGTGGTGTTTAAAGACTTCTAATCATCGGTGTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49749.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis