Browse Element(s) Details


Os.49750.1.S1_at

Description gb:AK110912.1
DB_XREF= gi:32996121
TID=Os.49750.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49750 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-173-C03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-173-C03, full insert sequence.
FL= gb:AK110912.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g509207/11WRKY DNA binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g50880OsAffx.14360.1.S1_at11/114+29886700..29889804Phosphoribulokinase, chloroplast precursor, putative, expressed
LOC_Os04g50890Os.8400.1.S1_at11/114+29890895..29894578secretory carrier membrane protein, putative, expressed
LOC_Os04g50900OsAffx.26555.1.S1_at11/114+29896282..29896741hypothetical protein
LOC_Os04g50910OsAffx.28971.2.S1_x_at11/114+29900089..29900652hypothetical protein
LOC_Os04g50920Os.49750.1.S1_at7/114+29913406..29917192WRKY DNA binding domain containing protein, expressed
LOC_Os04g50930OsAffx.26556.1.S1_at11/114+29926106..29929077POT family protein
LOC_Os04g50940Os.52974.1.S1_at11/114+29937166..29940108POT family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49750.1.S1_at--1100--7111Chr04:29916881..29916905 (25 bp)
GTCATGGACACTACTGCAGCTGGAG
LOC_Os04g50920
Os.49750.1.S1_at--344--1711Chr04:29916912..29916936 (25 bp)
ACCACAGTGAGCTCATGGATCATGT
LOC_Os04g50920
Os.49750.1.S1_at--367--6291Chr04:29916958..29916982 (25 bp)
GATGATACCGGAGACTGGCCAGCCG
LOC_Os04g50920
Os.49750.1.S1_at--1076--1671Chr04:29916978..29917002 (25 bp)
AGCCGGATGATTTCTTCGCAGACCT
LOC_Os04g50920
Os.49750.1.S1_at--1069--3211Chr04:29917065..29917089 (25 bp)
CAAGTGGTGGCGATCATGCCCAGGA
LOC_Os04g50920
Os.49750.1.S1_at--564--10851Chr04:29917109..29917133 (25 bp)
TTGGATCCATTCGACATGCTAGACT
LOC_Os04g50920
Os.49750.1.S1_at--939--2011Chr04:29917139..29917163 (25 bp)
ACTACTACTAACTCTTCGGCAGGGA
LOC_Os04g50920
Os.49750.1.S1_at--69--2791Chr04:29917181..29917205 (25 bp)
AAGAGAGGCTAAACCCATGGGCATA
NONE
Os.49750.1.S1_at--430--7891Chr04:29917237..29917261 (25 bp)
GGTTACATAAACTTGATCCCAGCTA
NONE
Os.49750.1.S1_at--115--7171Chr04:29917338..29917362 (25 bp)
GTCTCTCTGCTTCTTCATATTATTG
NONE
Os.49750.1.S1_at--1127--8091Chr04:29917402..29917426 (25 bp)
GGACCTCATTTTTTAGGCTGTGTCA
NONE
Target Sequence 
GTCATGGACACTACTGCAGCTGGAGTAGTAGACCACAGTGAGCTCATGGATCATGTTTTCAGTGAGAGCTACAAGCCGAT
GATACCGGAGACTGGCCAGCCGGATGATTTCTTCGCAGACCTCGCCGAGTTGGAGTCAGATCCCATGAGCTTAATCTTCT
CGAAGGAGTACATGGAAGCCAAGCCAAGTGGTGGCGATCATGCCCAGGAGAAGGCAATGGCCAAGGAATTGGATCCATTC
GACATGCTAGACTGGTCTACTACTACTAACTCTTCGGCAGGGAGCTCATTTGAGCAAGGGAAGAGAGGCTAAACCCATGG
GCATAAAGCCATGCATGAGGGTTTATGCATGCATACGGTTACATAAACTTGATCCCAGCTAATAACCATAAAGATTGTGA
CAATGTCAGCAAAGGAAAGATGAGATTTTTTTTTTTACTTTTCTTTTCTTCATTTGGTCTCTCTGCTTCTTCATATTATT
GTGTGTGAGAATTAAATTTTGTTTCAAGGTCTAGGTATATGGACCTCATTTTTTAGGCTGTGTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49750.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis