Browse Element(s) Details


OsAffx.26556.1.S1_at

Description tigr:9632.m04915
TID=OsAffx.26556.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=POT family, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5093011/11POT family protein
LOC_Os12g137904/11POT family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g50920Os.49750.1.S1_at7/114+29913406..29917192WRKY DNA binding domain containing protein, expressed
LOC_Os04g50930OsAffx.26556.1.S1_at11/114+29926106..29929077POT family protein
LOC_Os04g50940Os.52974.1.S1_at11/114+29937166..29940108POT family protein, expressed
LOC_Os04g50950Os.11322.1.S1_at11/114+29942366..29946429POT family protein, expressed
LOC_Os04g50960OsAffx.4142.1.S1_at11/114+29948266..29952818expressed protein
LOC_Os04g50970Os.12352.1.S1_at9/114+29953038..29955123seed specific protein Bn15D1B, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006857biological_processoligopeptide transport
GO:0015833biological_processpeptide transport
GO:0016020cellular_componentmembrane
GO:0005215molecular_functiontransporter activity
GO:0015197molecular_functionpeptide transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26556.1.S1_at--902--8692Chr12:7795852..7795876 (25 bp)
TGTCGTCCTTCCAGATGGCGTTCGT
LOC_Os12g13790
OsAffx.26556.1.S1_at--359--10631Chr04:29928550..29928574 (25 bp)
TTCGTCACGCTCTACAACAGGGCCG
LOC_Os04g50930
OsAffx.26556.1.S1_at--935--9851Chr04:29928562..29928586 (25 bp)
TACAACAGGGCCGTGATGCCCGCGG
LOC_Os04g50930
OsAffx.26556.1.S1_at--711--3891Chr04:29928901..29928925 (25 bp)
CTGGTGACTCTGGTGGCGAAGGTGA
LOC_Os04g50930
OsAffx.26556.1.S1_at--569--631Chr04:29928941..29928965 (25 bp)
ATGCAGGGTGGTTTCCACTGGACTT
LOC_Os04g50930
OsAffx.26556.1.S1_at--511--3311Chr04:29928956..29928980 (25 bp)
CACTGGACTTGGATGACGGTCACCT
LOC_Os04g50930
OsAffx.26556.1.S1_at--918--672Chr12:7796253..7796277 (25 bp)
ATGACGGTCACCTGGATTACTTCTT
LOC_Os12g13790
OsAffx.26556.1.S1_at--722--6552Chr12:7796267..7796291 (25 bp)
GATTACTTCTTCCTGCTCATCGTGG
LOC_Os12g13790
OsAffx.26556.1.S1_at--145--511Chr04:29929000..29929024 (25 bp)
ATCGTGGCCATCACCGCGGTGAACT
LOC_Os04g50930
OsAffx.26556.1.S1_at--21--9691Chr04:29929010..29929034 (25 bp)
TCACCGCGGTGAACTTCGCAGTTTA
LOC_Os04g50930
OsAffx.26556.1.S1_at--429--2512Chr12:7796306..7796330 (25 bp)
AACTTCGCAGTTTACGTCGCCCTCG
LOC_Os12g13790
Target Sequence 
TGTCGTCCTTCCAGATGGCGTTCGTCGCCGTCTTCGTCACGCTCTACAACAGGGCCGTGATGCCCGCGGCGCGCCGGTGC
CTCGGCCGCGCCGTGGCGTTCACGCCGCTGCAGCTCATGGGGTTCGGCCACGCGACGGCGGTCGTCGCGGTGGGCGTGGC
CGCGTGCACCGAGGCGCGCCGGCTGCACGCGGCCAGGGCCGGGGCGCCCGCCATGGGCATCGCGTGGCTGCTGCCGCAGT
ACCTCGTGATGGCCGCCTCCGACGCGTCGCTCACCGTCGGGCAGCTGGAGTTCTTCTACGACCAGTCGCCGGAGACGATG
CGGAGCGCGTCGACGGCGTTCTACTTCCTCGCCATATCGCTCGGGAACCTGCTCAACTCTCAGCTGGTGACTCTGGTGGC
GAAGGTGACCGCGGTATGGGGCAATGCAGGGTGGTTTCCACTGGACTTGGATGACGGTCACCTGGATTACTTCTTCCTGC
TCATCGTGGCCATCACCGCGGTGAACTTCGCAGTTTACGTCGCCCTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26556.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis