Browse Element(s) Details


OsAffx.4142.1.S1_at

Description tigr:9632.m04918
TID=OsAffx.4142.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5096011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g50930OsAffx.26556.1.S1_at11/114+29926106..29929077POT family protein
LOC_Os04g50940Os.52974.1.S1_at11/114+29937166..29940108POT family protein, expressed
LOC_Os04g50950Os.11322.1.S1_at11/114+29942366..29946429POT family protein, expressed
LOC_Os04g50960OsAffx.4142.1.S1_at11/114+29948266..29952818expressed protein
LOC_Os04g50970Os.12352.1.S1_at9/114+29953038..29955123seed specific protein Bn15D1B, putative, expressed
LOC_Os04g50980OsAffx.26557.1.S1_at11/114+29958147..29958647hypothetical protein
LOC_Os04g50990Os.9459.1.S1_at11/114+29961245..2996291460S ribosomal protein L12, putative, expressed
LOC_Os04g51000Os.57558.1.S1_at11/114+29963504..29966768Transcription factor FL, putative, expressed
LOC_Os04g51010OsAffx.21248.1.S1_x_at1/114+29977119..29981147Protein kinase domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4142.1.S1_at--346--5991Chr04:29950265..29950289 (25 bp)
GAGACAGTTGACGAGCCACATGATA
LOC_Os04g50960
OsAffx.4142.1.S1_at--231--8451Chr04:29950333..29950357 (25 bp)
GGCCAGTGAGGATCTGCTGCAGATT
LOC_Os04g50960
OsAffx.4142.1.S1_at--543--6511Chr04:29950388..29950412 (25 bp)
GATATTTGCCATGCCGTTGAACACA
LOC_Os04g50960
OsAffx.4142.1.S1_at--425--10111Chr04:29950462..29950486 (25 bp)
TATGGAGAATGCGTTCACCGGTGAC
LOC_Os04g50960
OsAffx.4142.1.S1_at--200--7371Chr04:29950482..29950506 (25 bp)
GTGACCTCACACTGAAGTTCGACGG
LOC_Os04g50960
OsAffx.4142.1.S1_at--686--7251Chr04:29950506..29950530 (25 bp)
GTCCTGGAGACTTGGGTGATCGCAA
LOC_Os04g50960
OsAffx.4142.1.S1_at--1065--6371Chr04:29950523..29950547 (25 bp)
GATCGCAATACCTCTCTTTTGGAAG
LOC_Os04g50960
OsAffx.4142.1.S1_at--618--1331Chr04:29950546..29950570 (25 bp)
AGAGGGAGCTCGGACCTTGCCACTA
LOC_Os04g50960
OsAffx.4142.1.S1_at--258--10691Chr04:29950562..29950586 (25 bp)
TTGCCACTATCTACTGAAACGCCCA
LOC_Os04g50960
OsAffx.4142.1.S1_at--497--5551Chr04:29950577..29950601 (25 bp)
GAAACGCCCAACAATGTCACTGATG
LOC_Os04g50960
OsAffx.4142.1.S1_at--1093--7091Chr04:29950592..29950616 (25 bp)
GTCACTGATGCGGTGGTCACAGCTG
LOC_Os04g50960
Target Sequence 
GAGACAGTTGACGAGCCACATGATACAGAGACAAATGCTGCTGAAAATGCTCAAGAGGAGGGAGTTGTGGCCAGTGAGGA
TCTGCTGCAGATTTCAGAGACCGAGCAAGATGAATTCAACTCGGATATTTGCCATGCCGTTGAACACAATGAAAGGGACA
ATGTAGAAAGTGTGTCATCAGAGAGGGAGGATGTCAGTATGGAGAATGCGTTCACCGGTGACCTCACACTGAAGTTCGAC
GGTCCTGGAGACTTGGGTGATCGCAATACCTCTCTTTTGGAAGAGGGAGCTCGGACCTTGCCACTATCTACTGAAACGCC
CAACAATGTCACTGATGCGGTGGTCACAGCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4142.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis