Browse Element(s) Details


Os.9459.1.S1_at

Description gb:BX897823
DB_XREF= gi:40486154
DB_XREF=BX897823
CLONE=p489d11p5
TID=Os.9459.1
CNT=17
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.9459 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with moderate similarity to protein ref:NP_181256.1 (A.thaliana) 60S ribosomal protein L12 (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5099011/1160S ribosomal protein L12, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g50940Os.52974.1.S1_at11/114+29937166..29940108POT family protein, expressed
LOC_Os04g50950Os.11322.1.S1_at11/114+29942366..29946429POT family protein, expressed
LOC_Os04g50960OsAffx.4142.1.S1_at11/114+29948266..29952818expressed protein
LOC_Os04g50970Os.12352.1.S1_at9/114+29953038..29955123seed specific protein Bn15D1B, putative, expressed
LOC_Os04g50980OsAffx.26557.1.S1_at11/114+29958147..29958647hypothetical protein
LOC_Os04g50990Os.9459.1.S1_at11/114+29961245..2996291460S ribosomal protein L12, putative, expressed
LOC_Os04g51000Os.57558.1.S1_at11/114+29963504..29966768Transcription factor FL, putative, expressed
LOC_Os04g51010OsAffx.21248.1.S1_x_at1/114+29977119..29981147Protein kinase domain containing protein, expressed
LOC_Os04g51020OsAffx.26558.1.S1_at11/114+29986246..29987989hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0007046biological_processribosome biogenesis
GO:0005840cellular_componentribosome
GO:0009282cellular_componentcytosolic large ribosomal subunit (sensu Bacteria)
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9459.1.S1_at--785--531Chr04:29961665..29961689 (25 bp)
ATCGCCAGGATCATGAGGAACAGGT
LOC_Os04g50990
Os.9459.1.S1_at--338--6371Chr04:29961724..29961748 (25 bp)
GATCCTTGGGACCTGCGTCAGCGTT
LOC_Os04g50990
Os.9459.1.S1_at--248--4031Chr04:29961739..29961763 (25 bp)
CGTCAGCGTTGGGTGCACCGTCGAC
LOC_Os04g50990
Os.9459.1.S1_at--426--7771Chr04:29961808..29961832 (25 bp)
GGTCGAGATCCCTTCGGCTTAAAAG
LOC_Os04g50990
Os.9459.1.S1_at--1136--5671Chr04:29962687..29962711 (25 bp)
GACATTACCATCTCGTGCTACTGAA
LOC_Os04g50990
Os.9459.1.S1_at--457--4851Chr04:29962703..29962727 (25 bp)
GCTACTGAAGTGATCATTTGTTCCA
LOC_Os04g50990
Os.9459.1.S1_at--31--2451Chr04:29962727..29962751 (25 bp)
AAAATGCTGCTTATGTACCTTACGA
LOC_Os04g50990
Os.9459.1.S1_at--926--6571Chr04:29962760..29962784 (25 bp)
GATTCGACCTATTTTTGTCATGCTT
LOC_Os04g50990
Os.9459.1.S1_at--936--6651Chr04:29962798..29962822 (25 bp)
GTTGAGACCTCAATGTTACTATTGC
LOC_Os04g50990
Os.9459.1.S1_at--742--6772Chr05:3054726..3054871 (24 bp)
GTTACTATTGCAACTTGGTACCATT
NONE
Os.9459.1.S1_at--1007--8571Chr04:29962827..29962851 (25 bp)
TGGTACCATTTGGTCCTCTGGAATG
LOC_Os04g50990
Target Sequence 
ATCGCCAGGATCATGAGGAACAGGTCCATGGCCAAGGAGATGGCCGGGACCGTCAAGGAGATCCTTGGGACCTGCGTCAG
CGTTGGGTGCACCGTCGACGGCAAGGACCCCAAGGATCTGCAGCAGGAGATCTCCGATGGCGAGGTCGAGATCCCTTCGG
CTTAAAAGGCTTGATATTTGAGGACATTACCATCTCGTGCTACTGAAGTGATCATTTGTTCCAAAATGCTGCTTATGTAC
CTTACGAGACNATGTGATTCGACCTATTTTTGTCATGCTTTAGTAGTGATCTTGTTGAGACCTCAATGTTACTATTGCAA
CTTGGTACCATTTGGTCCTCTGGAATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9459.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis