Browse Element(s) Details


Os.52974.1.S1_at

Description gb:AK070216.1
DB_XREF= gi:32980240
TID=Os.52974.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52974 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-201-E10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023045E19, full insert sequence.
FL= gb:AK070216.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5094011/11POT family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g50920Os.49750.1.S1_at7/114+29913406..29917192WRKY DNA binding domain containing protein, expressed
LOC_Os04g50930OsAffx.26556.1.S1_at11/114+29926106..29929077POT family protein
LOC_Os04g50940Os.52974.1.S1_at11/114+29937166..29940108POT family protein, expressed
LOC_Os04g50950Os.11322.1.S1_at11/114+29942366..29946429POT family protein, expressed
LOC_Os04g50960OsAffx.4142.1.S1_at11/114+29948266..29952818expressed protein
LOC_Os04g50970Os.12352.1.S1_at9/114+29953038..29955123seed specific protein Bn15D1B, putative, expressed
LOC_Os04g50980OsAffx.26557.1.S1_at11/114+29958147..29958647hypothetical protein
LOC_Os04g50990Os.9459.1.S1_at11/114+29961245..2996291460S ribosomal protein L12, putative, expressed
LOC_Os04g51000Os.57558.1.S1_at11/114+29963504..29966768Transcription factor FL, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006857biological_processoligopeptide transport
GO:0015833biological_processpeptide transport
GO:0016020cellular_componentmembrane
GO:0005215molecular_functiontransporter activity
GO:0015197molecular_functionpeptide transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52974.1.S1_at--881--4631Chr04:29939775..29939799 (25 bp)
GCGTTCGCGCGGAACTACAAGGTGA
LOC_Os04g50940
Os.52974.1.S1_at--236--2771Chr04:29939799..29939823 (25 bp)
AAGACGGTCGTGTCATGATCGCTCG
LOC_Os04g50940
Os.52974.1.S1_at--722--1891Chr04:29939829..29939853 (25 bp)
ACGTCCGCGCGTACATAGGCAAAAC
LOC_Os04g50940
Os.52974.1.S1_at--553--2191Chr04:29939885..29939909 (25 bp)
AAATACACGGGACACGTCCGGTGCA
LOC_Os04g50940
Os.52974.1.S1_at--354--7171Chr04:29939900..29939924 (25 bp)
GTCCGGTGCACCTGCGAAACGGTTT
LOC_Os04g50940
Os.52974.1.S1_at--201--5531Chr04:29939915..29939939 (25 bp)
GAAACGGTTTTTGTATCGCAGCGAC
LOC_Os04g50940
Os.52974.1.S1_at--551--531Chr04:29939929..29939953 (25 bp)
ATCGCAGCGACCAATATCTTCTGGC
LOC_Os04g50940
Os.52974.1.S1_at--534--6391Chr04:29939961..29939985 (25 bp)
GATCGACGCCATCGTGTTCCTTGTT
LOC_Os04g50940
Os.52974.1.S1_at--1082--7411Chr04:29939974..29939998 (25 bp)
GTGTTCCTTGTTGTTTATTGTTTCT
LOC_Os04g50940
Os.52974.1.S1_at--293--7611Chr04:29940036..29940060 (25 bp)
GGGCAACAGGACATCCATGAACTTT
LOC_Os04g50940
Os.52974.1.S1_at--727--3671Chr04:29940057..29940081 (25 bp)
CTTTATTTATGCTGTGGTCCTGAAA
LOC_Os04g50940
Target Sequence 
GCGTTCGCGCGGAACTACAAGGTGAAGACGGTCGTGTCATGATCGCTCGCCCACACGTCCGCGCGTACATAGGCAAAACA
AGGTAGCGTTAGGAACGGGGTGCGTCCAGGAAATACACGGGACACGTCCGGTGCACCTGCGAAACGGTTTTTGTATCGCA
GCGACCAATATCTTCTGGCTGCTGCTGATCGACGCCATCGTGTTCCTTGTTGTTTATTGTTTCTTTCTTTTTGTCGGTTT
TACTGGAAAGGAAATACGGATGGGCAACAGGACATCCATGAACTTTATTTATGCTGTGGTCCTGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52974.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis