Browse Element(s) Details


Os.57558.1.S1_at

Description gb:AB005620.1
DB_XREF= gi:2274789
GEN=RFL
TID=Os.57558.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.57558 (NCBI UniGene Cluster)
UG_TITLE=MRNA for RFL gene, complete cds
DEF=Oryza sativa mRNA for RFL gene, complete cds.
FL= gb:AB005620.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5100011/11Transcription factor FL, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g50940Os.52974.1.S1_at11/114+29937166..29940108POT family protein, expressed
LOC_Os04g50950Os.11322.1.S1_at11/114+29942366..29946429POT family protein, expressed
LOC_Os04g50960OsAffx.4142.1.S1_at11/114+29948266..29952818expressed protein
LOC_Os04g50970Os.12352.1.S1_at9/114+29953038..29955123seed specific protein Bn15D1B, putative, expressed
LOC_Os04g50980OsAffx.26557.1.S1_at11/114+29958147..29958647hypothetical protein
LOC_Os04g50990Os.9459.1.S1_at11/114+29961245..2996291460S ribosomal protein L12, putative, expressed
LOC_Os04g51000Os.57558.1.S1_at11/114+29963504..29966768Transcription factor FL, putative, expressed
LOC_Os04g51010OsAffx.21248.1.S1_x_at1/114+29977119..29981147Protein kinase domain containing protein, expressed
LOC_Os04g51020OsAffx.26558.1.S1_at11/114+29986246..29987989hypothetical protein
LOC_Os04g51030Os.49796.1.S1_at11/114+29990047..29994880Calcium binding EGF domain containing protein, expressed
LOC_Os04g51030OsAffx.21248.1.S1_x_at1/114+29990047..29994880Calcium binding EGF domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009740biological_processgibberellic acid mediated signaling
GO:0009908biological_processflower development
GO:0005634cellular_componentnucleus
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.57558.1.S1_at--970--1291Chr04:29964022..29964046 (25 bp)
AGATGCGGCACTACGTGCACTGCTA
LOC_Os04g51000
Os.57558.1.S1_at--785--9951Chr04:29963999..29964023 (25 bp)
TACGCGCTGCACTGCCTGGACGAGG
LOC_Os04g51000
Os.57558.1.S1_at--941--10771Chr04:29963738..29963762 (25 bp)
TTGTTCTAAGCTCGCCGGAGACTCT
LOC_Os04g51000
Os.57558.1.S1_at--1057--8791Chr04:29963669..29963693 (25 bp)
TGTTGGGCCGTGTTTTCGTTGTAAG
LOC_Os04g51000
Os.57558.1.S1_at--788--6611Chr04:29963652..29963676 (25 bp)
GTTGTAAGGCAGTTAGGTCGTTCTA
LOC_Os04g51000
Os.57558.1.S1_at--239--4031Chr04:29963634..29963658 (25 bp)
CGTTCTAAGCTATTCGATGGGCCGA
LOC_Os04g51000
Os.57558.1.S1_at--216--6151Chr04:29963604..29963628 (25 bp)
GATGCGTCGTCGTGTAGGAACTCGT
LOC_Os04g51000
Os.57558.1.S1_at--497--931Chr04:29963589..29963613 (25 bp)
AGGAACTCGTCGTGTACCCATGTTT
LOC_Os04g51000
Os.57558.1.S1_at--157--751Chr04:29963570..29963594 (25 bp)
ATGTTTGCGATCTGGATGGCCCATT
LOC_Os04g51000
Os.57558.1.S1_at--435--8411Chr04:29963553..29963577 (25 bp)
GGCCCATTTGTTTAGCTGTTACCAT
LOC_Os04g51000
Os.57558.1.S1_at--657--8751Chr04:29963537..29963561 (25 bp)
TGTTACCATGTTAAATTCGTTTCCT
LOC_Os04g51000
Target Sequence 
AGATGCGGCACTACGTGCACTGCTACGCGCTGCACTGCCTGGACGAGGAGGCGTCGGACGCGCTGCGGCGCGCCTACAAG
GCCCGCGGCGAGAACGTGGGGGCGTGGAGGCAGGCCTGCTACGCGCCGCTCGTCGACATCTCCGCGCGCCACGGATTCGA
CATCGACGCCGTCTTCGCCGCGCACCCGCGCCTCGCCATCTGGTACGTGCCCACCAGACTCCGCCAGCTCTGCCACCAGG
CGCGGAGCAGCCACGCCGCCGCCGCCGCCGCGCTCCCGCCGCCCTTGTTCTAAGCTCGCCGGAGACTCTGCTGCTGTTCC
CGCGCCGCCACGGCGCGTGGGAGTTTCCTGTGGTGTTGGGCCGTGTTTTCGTTGTAAGGCAGTTAGGTCGTTCTAAGCTA
TTCGATGGGCCGATCGAGGATGCGTCGTCGTGTAGGAACTCGTCGTGTACCCATGTTTGCGATCTGGATGGCCCATTTGT
TTAGCTGTTACCATGTTAAATTCGTTTCCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.57558.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis