Browse Element(s) Details


OsAffx.26558.1.S1_at

Description tigr:9632.m04924
TID=OsAffx.26558.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5102011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g50990Os.9459.1.S1_at11/114+29961245..2996291460S ribosomal protein L12, putative, expressed
LOC_Os04g51000Os.57558.1.S1_at11/114+29963504..29966768Transcription factor FL, putative, expressed
LOC_Os04g51010OsAffx.21248.1.S1_x_at1/114+29977119..29981147Protein kinase domain containing protein, expressed
LOC_Os04g51020OsAffx.26558.1.S1_at11/114+29986246..29987989hypothetical protein
LOC_Os04g51030Os.49796.1.S1_at11/114+29990047..29994880Calcium binding EGF domain containing protein, expressed
LOC_Os04g51030OsAffx.21248.1.S1_x_at1/114+29990047..29994880Calcium binding EGF domain containing protein, expressed
LOC_Os04g51040Os.49816.1.S1_at11/114+29995979..29998607wall-associated kinase 1, putative, expressed
LOC_Os04g51050Os.49780.1.S1_x_at11/114+30001212..30004083wall-associated kinase 1, putative, expressed
LOC_Os04g51060Os.14046.1.S1_at11/114+30005404..30011390expressed protein
LOC_Os04g51060Os.26004.1.S1_x_at2/114+30005404..30011390expressed protein
LOC_Os04g51060Os.26004.3.S1_x_at1/114+30005404..30011390expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26558.1.S1_at--716--5151Chr04:29986276..29986300 (25 bp)
GCAACTCTATCCAGGTGCTTTGAGC
LOC_Os04g51020
OsAffx.26558.1.S1_at--231--2551Chr04:29986278..29986302 (25 bp)
AACTCTATCCAGGTGCTTTGAGCCT
LOC_Os04g51020
OsAffx.26558.1.S1_at--67--10151Chr04:29986283..29986307 (25 bp)
TATCCAGGTGCTTTGAGCCTGCTCC
LOC_Os04g51020
OsAffx.26558.1.S1_at--590--3431Chr04:29986287..29986311 (25 bp)
CAGGTGCTTTGAGCCTGCTCCTTGT
LOC_Os04g51020
OsAffx.26558.1.S1_at--16--4891Chr04:29986292..29986316 (25 bp)
GCTTTGAGCCTGCTCCTTGTGTTAT
LOC_Os04g51020
OsAffx.26558.1.S1_at--770--9091Chr04:29986302..29986326 (25 bp)
TGCTCCTTGTGTTATTCCCCTTTCA
LOC_Os04g51020
OsAffx.26558.1.S1_at--428--91Chr04:29986315..29986700 (25 bp)
ATTCCCCTTTCACATGGCGGAGATA
LOC_Os04g51020
OsAffx.26558.1.S1_at--561--9291Chr04:29986317..29986702 (25 bp)
TCCCCTTTCACATGGCGGAGATATG
LOC_Os04g51020
OsAffx.26558.1.S1_at--848--10511Chr04:29986323..29986708 (25 bp)
TTCACATGGCGGAGATATGTTTGGG
LOC_Os04g51020
OsAffx.26558.1.S1_at--41--9831Chr04:29987829..29987946 (25 bp)
TAACACACCCGAAGCTGGTCGCCTG
LOC_Os04g51020
OsAffx.26558.1.S1_at--182--4731Chr04:29987935..29987959 (25 bp)
GCTGGTCGCCTGGTCCTTAGATGTA
LOC_Os04g51020
Target Sequence 
GCAACTCTATCCAGGTGCTTTGAGCCTGCTCCTTGTGTTATTCCCCTTTCACATGGCGGAGATATGTTTGGGCAAAAGTC
TGCCGCAAAGACTTATGGTATCTTAGAGTTTGTTAGAGATAATGGTCGTGTCCGGATCAAATTAACTGGCACGCTAACAC
ACCCGAAGCTGGTCGCCTGGTCCTTAGATGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26558.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis