Browse Element(s) Details


Os.14046.1.S1_at

Description gb:AK072303.1
DB_XREF= gi:32982326
TID=Os.14046.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.14046 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023024H09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023024H09, full insert sequence.
FL= gb:AK072303.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5106011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g51010OsAffx.21248.1.S1_x_at1/114+29977119..29981147Protein kinase domain containing protein, expressed
LOC_Os04g51020OsAffx.26558.1.S1_at11/114+29986246..29987989hypothetical protein
LOC_Os04g51030Os.49796.1.S1_at11/114+29990047..29994880Calcium binding EGF domain containing protein, expressed
LOC_Os04g51030OsAffx.21248.1.S1_x_at1/114+29990047..29994880Calcium binding EGF domain containing protein, expressed
LOC_Os04g51040Os.49816.1.S1_at11/114+29995979..29998607wall-associated kinase 1, putative, expressed
LOC_Os04g51050Os.49780.1.S1_x_at11/114+30001212..30004083wall-associated kinase 1, putative, expressed
LOC_Os04g51060Os.14046.1.S1_at11/114+30005404..30011390expressed protein
LOC_Os04g51060Os.26004.1.S1_x_at2/114+30005404..30011390expressed protein
LOC_Os04g51060Os.26004.3.S1_x_at1/114+30005404..30011390expressed protein
LOC_Os04g51070Os.49995.1.S1_at11/114+30016340..30019772Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os04g51080Os.24764.1.S1_a_at11/114+30022520..30027616Scramblase family protein, expressed
LOC_Os04g51080OsAffx.19600.1.S1_x_at1/114+30022520..30027616Scramblase family protein, expressed
LOC_Os04g51090NANA4+30030370..30044364expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.14046.1.S1_at--899--731Chr04:30005970..30005994 (25 bp)
ATGTTCATACATCAAACGTGCTCAT
LOC_Os04g51060
Os.14046.1.S1_at--1143--7311Chr04:30005953..30005977 (25 bp)
GTGCTCATCTCTGACTGCAGTGGAT
LOC_Os04g51060
Os.14046.1.S1_at--48--6651Chr04:30005905..30005929 (25 bp)
GTTGTATTCCATTCCAAATGCCATA
LOC_Os04g51060
Os.14046.1.S1_at--945--3051Chr04:30005868..30005892 (25 bp)
AATCTGATGGATACCTTCTCCGGAG
LOC_Os04g51060
Os.14046.1.S1_at--836--10571Chr04:30005853..30005877 (25 bp)
TTCTCCGGAGAATAGCCAACCACCT
LOC_Os04g51060
Os.14046.1.S1_at--131--3811Chr04:30005830..30005854 (25 bp)
CTCCCTGAAGTAGCTTGTTCGCAGA
LOC_Os04g51060
Os.14046.1.S1_at--916--6171Chr04:30005629..30005653 (25 bp)
GAGGAACCTGTTTCACCTTTATGTT
LOC_Os04g51060
Os.14046.1.S1_at--901--1151Chr04:30005541..30005565 (25 bp)
AGTCTATCTTCGCTGTTAACCGTCG
LOC_Os04g51060
Os.14046.1.S1_at--396--6771Chr04:30005527..30005551 (25 bp)
GTTAACCGTCGTATCACAGTATATG
LOC_Os04g51060
Os.14046.1.S1_at--742--6711Chr04:30005483..30005507 (25 bp)
GTTCTGAAAACTTCTACAGTGTGTT
LOC_Os04g51060
Os.14046.1.S1_at--579--6511Chr04:30005417..30005441 (25 bp)
GATATACTTCGCATACATCTTCATA
LOC_Os04g51060
Target Sequence 
ATGTTCATACATCAAACGTGCTCATCTCTGACTGCAGTGGATGACGTAAAGATTGAGAACCATTAGTTGTATTCCATTCC
AAATGCCATATCTTGATTAGGCAATCTGATGGATACCTTCTCCGGAGAATAGCCAACCACCTCCCTGAAGTAGCTTGTTC
GCAGAGCAATAAGAATGGTGACCACTACTTGGANTTGGCTGTCTCCTGTACTGTAAAGTACTAACTTCAGCATTTTATAC
CATGTCTGTTTAGTTGAATTTTTACANTACATAGCCAACAATCAATAGGTTGTCATGTATANTTGCTACACCTATATTCA
GATGTAGTAGTTATTTACTGTTTAGAGGAACCTGTTTCACCTTTATGTTCAGAAGCACATATTTAGGTAGTTGATGTAAC
ATATCAGAACNAGGTACACCAANNGATGTAAACAGTCTATCTTCGCTGTTAACCGTCGTATCACAGTATATGTCAATAAC
CAGATTTGGTAGTTCTGAAAACTTCTACAGTGTGTTATATATGGCATTCTTTGTGTCAAGAACAGATNNAGGATTGTGAT
ATACTTCGCATACATCTTCATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.14046.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis