Browse Element(s) Details


Os.49780.1.S1_x_at

Description gb:AK111662.1
DB_XREF= gi:37988325
TID=Os.49780.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49780 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013153M19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013153M19, full insert sequence.
FL= gb:AK111662.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5105011/11wall-associated kinase 1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g51010OsAffx.21248.1.S1_x_at1/114+29977119..29981147Protein kinase domain containing protein, expressed
LOC_Os04g51020OsAffx.26558.1.S1_at11/114+29986246..29987989hypothetical protein
LOC_Os04g51030Os.49796.1.S1_at11/114+29990047..29994880Calcium binding EGF domain containing protein, expressed
LOC_Os04g51030OsAffx.21248.1.S1_x_at1/114+29990047..29994880Calcium binding EGF domain containing protein, expressed
LOC_Os04g51040Os.49816.1.S1_at11/114+29995979..29998607wall-associated kinase 1, putative, expressed
LOC_Os04g51050Os.49780.1.S1_x_at11/114+30001212..30004083wall-associated kinase 1, putative, expressed
LOC_Os04g51060Os.14046.1.S1_at11/114+30005404..30011390expressed protein
LOC_Os04g51060Os.26004.1.S1_x_at2/114+30005404..30011390expressed protein
LOC_Os04g51060Os.26004.3.S1_x_at1/114+30005404..30011390expressed protein
LOC_Os04g51070Os.49995.1.S1_at11/114+30016340..30019772Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os04g51080Os.24764.1.S1_a_at11/114+30022520..30027616Scramblase family protein, expressed
LOC_Os04g51080OsAffx.19600.1.S1_x_at1/114+30022520..30027616Scramblase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007166biological_processcell surface receptor linked signal transduction
GO:0009751biological_processresponse to salicylic acid stimulus
GO:0009826biological_processunidimensional cell growth
GO:0048527biological_processlateral root development
GO:0005886cellular_componentplasma membrane
GO:0009505cellular_componentcell wall (sensu Magnoliophyta)
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49780.1.S1_x_at--44--2631Chr04:30001740..30001764 (25 bp)
AACCGTTGCACAATTGGCTTTACGA
LOC_Os04g51050
Os.49780.1.S1_x_at--733--5531Chr04:30001638..30001662 (25 bp)
GAAACAACACTTGGTCCTGCAGACC
LOC_Os04g51050
Os.49780.1.S1_x_at--815--5371Chr04:30001613..30001637 (25 bp)
GAAGAAGACCCTCTGCTCTGCGAAT
LOC_Os04g51050
Os.49780.1.S1_x_at--177--7051Chr04:30001571..30001595 (25 bp)
GTAAACATCGAAGCATCCTCCGAGT
LOC_Os04g51050
Os.49780.1.S1_x_at--327--571Chr04:30001557..30001581 (25 bp)
ATCCTCCGAGTTTGAGCCTTGATAA
LOC_Os04g51050
Os.49780.1.S1_x_at--781--8771Chr04:30001474..30001498 (25 bp)
TGTTAGTCCTCCCAGCACAAATGGT
LOC_Os04g51050
Os.49780.1.S1_x_at--979--5111Chr04:30001460..30001484 (25 bp)
GCACAAATGGTTTTCCCTTAGTTAT
LOC_Os04g51050
Os.49780.1.S1_x_at--762--151Chr04:30001437..30001461 (25 bp)
ATTATAACTCAGTCCCCAGTTTCAT
LOC_Os04g51050
Os.49780.1.S1_x_at--865--2991Chr04:30001409..30001433 (25 bp)
AATGATTTTCTGTGTTGCTCTGAGC
LOC_Os04g51050
Os.49780.1.S1_x_at--728--10711Chr04:30001395..30001419 (25 bp)
TTGCTCTGAGCTGCCAATCATGTAG
LOC_Os04g51050
Os.49780.1.S1_x_at--613--1111Chr04:30001335..30001359 (25 bp)
AGTGTTGTCGAACTCCAATGTCTGT
LOC_Os04g51050
Target Sequence 
AACCGTTGCACAATTGGCTTTACGATGCTTAAGGTCGAGAGGTGAAGAGAGGCCAAGGATGATAGAGGTGGCAATTGAAC
TTGAAGCTCTGAGAAGGCTGATGAAACAACACTTGGTCCTGCAGACCGAAGAAGACCCTCTGCTCTGCGAATCAGGTCAG
CATGCAGATGTAAACATCGAAGCATCCTCCGAGTTTGAGCCTTGATAACATTACCAAGGAGGAGGAAAGCATGGACACCA
TTCTACTCCCATTCAGGGCCCTCTCATGTTAGTCCTCCCAGCACAAATGGTTTTCCCTTAGTTATTATAACTCAGTCCCC
AGTTTCATGACAATGATTTTCTGTGTTGCTCTGAGCTGCCAATCATGTAGAAACCCAGAGACGGGTATACTAGGAATAAT
TGGAGAGTGTTGTCGAACTCCAATGTCTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49780.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis