Browse Element(s) Details


Os.49995.1.S1_at

Description gb:AK119509.1
DB_XREF= gi:37989132
TID=Os.49995.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49995 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-134-F08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-134-F08, full insert sequence.
FL= gb:AK119509.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5107011/11Helix-loop-helix DNA-binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g51030Os.49796.1.S1_at11/114+29990047..29994880Calcium binding EGF domain containing protein, expressed
LOC_Os04g51030OsAffx.21248.1.S1_x_at1/114+29990047..29994880Calcium binding EGF domain containing protein, expressed
LOC_Os04g51040Os.49816.1.S1_at11/114+29995979..29998607wall-associated kinase 1, putative, expressed
LOC_Os04g51050Os.49780.1.S1_x_at11/114+30001212..30004083wall-associated kinase 1, putative, expressed
LOC_Os04g51060Os.14046.1.S1_at11/114+30005404..30011390expressed protein
LOC_Os04g51060Os.26004.1.S1_x_at2/114+30005404..30011390expressed protein
LOC_Os04g51060Os.26004.3.S1_x_at1/114+30005404..30011390expressed protein
LOC_Os04g51070Os.49995.1.S1_at11/114+30016340..30019772Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os04g51080Os.24764.1.S1_a_at11/114+30022520..30027616Scramblase family protein, expressed
LOC_Os04g51080OsAffx.19600.1.S1_x_at1/114+30022520..30027616Scramblase family protein, expressed
LOC_Os04g51090NANA4+30030370..30044364expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49995.1.S1_at--62--4231Chr04:30017005..30017029 (25 bp)
CCGCTGATGGCGAGAGCTCATCGAT
LOC_Os04g51070
Os.49995.1.S1_at--791--6451Chr04:30016964..30016988 (25 bp)
GATCAAGACAATCAGCTCCATGGAG
LOC_Os04g51070
Os.49995.1.S1_at--141--8211Chr04:30016905..30016929 (25 bp)
GGAATGCCACGTTGATGTCCGCATA
LOC_Os04g51070
Os.49995.1.S1_at--74--5391Chr04:30016845..30016869 (25 bp)
GAAGAAGGCCAACTCTCTGCTTCAT
LOC_Os04g51070
Os.49995.1.S1_at--967--4331Chr04:30016797..30016821 (25 bp)
CCAGCTCGAGCTTATCCATGTAGTG
LOC_Os04g51070
Os.49995.1.S1_at--829--1011Chr04:30016616..30016640 (25 bp)
AGGTTCGGCGGTTTATGCATGTGCA
LOC_Os04g51070
Os.49995.1.S1_at--546--2691Chr04:30016582..30016606 (25 bp)
AAGCTCCTTCAAGCAGTGGACGTGC
LOC_Os04g51070
Os.49995.1.S1_at--95--871Chr04:30016551..30016575 (25 bp)
AGGCCCTCGACATATTCAACTAATC
LOC_Os04g51070
Os.49995.1.S1_at--428--7251Chr04:30016496..30016520 (25 bp)
GTCCTAGATTTTCAGTTACCTTGCT
LOC_Os04g51070
Os.49995.1.S1_at--608--2551Chr04:30016386..30016410 (25 bp)
AACGGCTTGCTGCTGTCCGGTTGTA
LOC_Os04g51070
Os.49995.1.S1_at--981--7911Chr04:30016368..30016392 (25 bp)
GGTTGTACACCTTAACTAGCCTGAC
LOC_Os04g51070
Target Sequence 
CCGCTGATGGCGAGAGCTCATCGATGAGGCCAGTGAGGGATGATCAAGACAATCAGCTCCATGGAGCCATAAGGAGCTCA
TGGGTTCAGAGGAGGTCAAAGGAATGCCACGTTGATGTCCGCATACTGGACGATGAAGTAAACATCAAGCTCACTGAAAA
GAAGAAGGCCAACTCTCTGCTTCATGCAGCAAAGGTTCTAGATGAGTTCCAGCTCGAGCTTATCCATGTAGTGGGTGGGA
TTATAGGTGATCACCATATATTCATGTTCAACACTAAGGTATCAGAAGGTTCGGCGGTTTATGCATGTGCAGTGGCAAAG
AAGCTCCTTCAAGCAGTGGACGTGCAACACCAGGCCCTCGACATATTCAACTAATCTTTAGCAACAGTACTGATTATCTG
AACAATGTCCTAGATTTTCAGTTACCTTGCTGAGCAAACTTATTTGACCAGGATTGGAGAGAATTTTATCTTTAGCACTA
GCTACCTAGCAAAACTTCTTAACAATTTGGCCATGTAACGGCTTGCTGCTGTCCGGTTGTACACCTTAACTAGCCTGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49995.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis