Browse Element(s) Details


Os.49762.1.S1_at

Description gb:AY177696.1
DB_XREF= gi:30313676
TID=Os.49762.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49762 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) transcription factor MADS27 mRNA, complete cds.
PROD=transcription factor MADS27
FL= gb:AY177696.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3692410/11Agamous-like MADS box protein AGL21, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g36890OsAffx.24606.3.S1_at11/112+22262051..22264368Myb-like DNA-binding domain containing protein, expressed
LOC_Os02g36890OsAffx.24606.2.S1_x_at1/112+22262051..22264368Myb-like DNA-binding domain containing protein, expressed
LOC_Os02g36900Os.43567.1.S1_x_at3/112+22284114..22284779retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g36900Os.38172.1.S1_x_at2/112+22284114..22284779retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g36910NANA2+22286425..22286958transposon protein, putative, unclassified
LOC_Os02g36924Os.49762.2.S1_a_at11/112+22288807..22295939Agamous-like MADS box protein AGL21, putative, expressed
LOC_Os02g36924Os.49762.1.S1_at10/112+22288807..22295939Agamous-like MADS box protein AGL21, putative, expressed
LOC_Os02g36924OsAffx.21001.1.A1_at1/112+22288807..22295939Agamous-like MADS box protein AGL21, putative, expressed
LOC_Os02g36940Os.17177.1.S1_at11/112+22305964..22307266expressed protein
LOC_Os02g36940OsAffx.22650.2.S1_x_at1/112+22305964..22307266expressed protein
LOC_Os02g36950Os.8146.1.S1_at11/112+22314003..22315404expressed protein
LOC_Os02g36950OsAffx.22650.1.S1_x_at1/112+22314003..22315404expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0007584biological_processresponse to nutrient
GO:0048440biological_processcarpel development
GO:0048443biological_processstamen development
GO:0048497biological_processmaintenance of floral organ identity
GO:0048527biological_processlateral root development
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49762.1.S1_at--609--1931NONE
ACTCGGAGCTTAAGTTTTGGCAAAG
NONE
Os.49762.1.S1_at--6--5351Chr02:22295122..22295146 (25 bp)
GAAGATCTATCTGGGCTGAATGTTA
LOC_Os02g36924
Os.49762.1.S1_at--711--351Chr02:22295179..22295203 (25 bp)
ATAAGTCTACGTAGTGTCCGTACAA
LOC_Os02g36924
Os.49762.1.S1_at--79--971Chr02:22295300..22295324 (25 bp)
AGGACCACGTCTTGATTGATGAAAT
LOC_Os02g36924
Os.49762.1.S1_at--692--8171Chr02:22295434..22295455 (22 bp)
GGAAGGGAAGTCTAGTTCACCAAGA
LOC_Os02g36924
Os.49762.1.S1_at--902--7911Chr02:22295641..22295665 (25 bp)
GGATTCACCAACTCCTTACAATTTT
LOC_Os02g36924
Os.49762.1.S1_at--169--2191Chr02:22295681..22295705 (25 bp)
ACAAATGTTCCTGTGCAACTTGGAC
LOC_Os02g36924
Os.49762.1.S1_at--683--1111Chr02:22295726..22295750 (25 bp)
AGTGACGCCGAACAATCAACTGCTC
LOC_Os02g36924
Os.49762.1.S1_at--893--2531Chr02:22295743..22295847 (25 bp)
AACTGCTCCTAAGCTAGGGTTACAG
LOC_Os02g36924
Os.49762.1.S1_at--642--6771Chr02:22295841..22295865 (25 bp)
GTTACAGTTGAATCCATGACCAGAA
LOC_Os02g36924
Os.49762.1.S1_at--926--2071Chr02:22295868..22295892 (25 bp)
ACATTGTTTTGCTACACCCTTGTAT
LOC_Os02g36924
Target Sequence 
ACTCGGAGCTTAAGTTTTGGCAAAGGGAGGCAGCAAGCTTGAGANNACAACTGCACAACTTGCAAGAAAATCATCGGCAG
TTGATGGGCGAAGATCTATCTGGGCTGAATGTTAAGGAATTGCAATCTCTAGAGAATCAGCTGGAAATAAGTCTACGTAG
TGTCCGTACAAAGAAGGACCACGTCTTGATTGATGAAATTCATGAACTGAATCGGAAGGGAAGTCTAGTTCACCAAGAAA
ACATGGAATTATACAAGAAGATCAGTTTAATTCGTCAAGAAAATGCTGAGTTATATAAGAAGATCTACGAGACTGAAGGA
CCAAGTGAAGTCAATCGGGATTCACCAACTCCTTACAATTTTGCAGTAATTGAAAAAACAAATGTTCCTGTGCAACTTGG
ACTCAGCACACTACCACAACATAGTGACGCCGAACAATCAACTGCTCCTAAGCTAGGGTTACAGTTGAATCCATGACCAG
AAAAACATTGTTTTGCTACACCCTTGTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49762.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis