Browse Element(s) Details


OsAffx.24606.3.S1_at

Description tigr:9630.m03526
TID=OsAffx.24606.3
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=P-type R2R3 Myb protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3689011/11Myb-like DNA-binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g36870Os.11959.1.S1_at11/112+22239136..22241669expressed protein
LOC_Os02g36880Os.9492.1.S1_a_at11/112+22252971..22254789No apical meristem protein, expressed
LOC_Os02g36880Os.51926.1.S1_x_at1/112+22252971..22254789No apical meristem protein, expressed
LOC_Os02g36890OsAffx.24606.3.S1_at11/112+22262051..22264368Myb-like DNA-binding domain containing protein, expressed
LOC_Os02g36890OsAffx.24606.2.S1_x_at1/112+22262051..22264368Myb-like DNA-binding domain containing protein, expressed
LOC_Os02g36900Os.43567.1.S1_x_at3/112+22284114..22284779retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g36900Os.38172.1.S1_x_at2/112+22284114..22284779retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g36910NANA2+22286425..22286958transposon protein, putative, unclassified
LOC_Os02g36924Os.49762.2.S1_a_at11/112+22288807..22295939Agamous-like MADS box protein AGL21, putative, expressed
LOC_Os02g36924Os.49762.1.S1_at10/112+22288807..22295939Agamous-like MADS box protein AGL21, putative, expressed
LOC_Os02g36924OsAffx.21001.1.A1_at1/112+22288807..22295939Agamous-like MADS box protein AGL21, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.24606.3.S1_at--975--1891Chr02:22263671..22263695 (25 bp)
ACGTCGACTCTCAGCTTCTCGGAGA
LOC_Os02g36890
OsAffx.24606.3.S1_at--309--6011Chr02:22263692..22263716 (25 bp)
GAGAGCGCATTGTTCGGCGCAGGCA
LOC_Os02g36890
OsAffx.24606.3.S1_at--189--6751Chr02:22263758..22263782 (25 bp)
GTTCAGGCCGTGCAGTCATCATACG
LOC_Os02g36890
OsAffx.24606.3.S1_at--1032--3991Chr02:22263789..22263813 (25 bp)
CGTGCCAGGAGCACCACTTCGGCGG
LOC_Os02g36890
OsAffx.24606.3.S1_at--1046--8091Chr02:22263846..22263870 (25 bp)
GGACGCTGGCCGGTGTCCTTCTTGA
LOC_Os02g36890
OsAffx.24606.3.S1_at--35--7751Chr02:22263857..22263881 (25 bp)
GGTGTCCTTCTTGACTGCTCCGTCA
LOC_Os02g36890
OsAffx.24606.3.S1_at--447--4251Chr02:22263882..22263906 (25 bp)
CCGGCGCCGACCAGAGATTCGCGGA
LOC_Os02g36890
OsAffx.24606.3.S1_at--71--331Chr02:22263974..22263998 (25 bp)
ATACTGAACATGGTCAACTCGTCCA
LOC_Os02g36890
OsAffx.24606.3.S1_at--384--5471Chr02:22263979..22264003 (25 bp)
GAACATGGTCAACTCGTCCATGTCG
LOC_Os02g36890
OsAffx.24606.3.S1_at--710--9391Chr02:22264013..22264037 (25 bp)
TCGTCGTTGACTTCCGAGGTGGTCA
LOC_Os02g36890
OsAffx.24606.3.S1_at--771--6151Chr02:22264018..22264042 (25 bp)
GTTGACTTCCGAGGTGGTCACGGAC
LOC_Os02g36890
Target Sequence 
ACGTCGACTCTCAGCTTCTCGGAGAGCGCATTGTTCGGCGCAGGCAGTGCGGCCCCCGACATACACGGCGCCGCGCGCGC
CGCCGCCGTTCAGGCCGTGCAGTCATCATACGGGGAGGCGTGCCAGGAGCACCACTTCGGCGGCGCCACCGCCGAGACGA
GCTTTGCCGGAGCCGGGACGCTGGCCGGTGTCCTTCTTGACTGCTCCGTCACCGGCGCCGACCAGAGATTCGCGGAGAGG
ACCGAGGCCTGCTCCGGCGAGCTGCAGGGGGAGGACGACGACGACAAGGGCTACTGGAACAGCATACTGAACATGGTCAA
CTCGTCCATGTCGTCGTCTTCCTCGTCGTTGACTTCCGAGGTGGTCACGGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.24606.3.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis