Browse Element(s) Details


Os.49762.2.S1_a_at

Description gb:AY551923.1
DB_XREF= gi:45385967
TID=Os.49762.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49762 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) MADS-box protein RMADS218 mRNA, complete cds.
PROD=MADS-box protein RMADS218
FL= gb:AY551923.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3692411/11Agamous-like MADS box protein AGL21, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g36890OsAffx.24606.3.S1_at11/112+22262051..22264368Myb-like DNA-binding domain containing protein, expressed
LOC_Os02g36890OsAffx.24606.2.S1_x_at1/112+22262051..22264368Myb-like DNA-binding domain containing protein, expressed
LOC_Os02g36900Os.43567.1.S1_x_at3/112+22284114..22284779retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g36900Os.38172.1.S1_x_at2/112+22284114..22284779retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g36910NANA2+22286425..22286958transposon protein, putative, unclassified
LOC_Os02g36924Os.49762.2.S1_a_at11/112+22288807..22295939Agamous-like MADS box protein AGL21, putative, expressed
LOC_Os02g36924Os.49762.1.S1_at10/112+22288807..22295939Agamous-like MADS box protein AGL21, putative, expressed
LOC_Os02g36924OsAffx.21001.1.A1_at1/112+22288807..22295939Agamous-like MADS box protein AGL21, putative, expressed
LOC_Os02g36940Os.17177.1.S1_at11/112+22305964..22307266expressed protein
LOC_Os02g36940OsAffx.22650.2.S1_x_at1/112+22305964..22307266expressed protein
LOC_Os02g36950Os.8146.1.S1_at11/112+22314003..22315404expressed protein
LOC_Os02g36950OsAffx.22650.1.S1_x_at1/112+22314003..22315404expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0007584biological_processresponse to nutrient
GO:0048440biological_processcarpel development
GO:0048443biological_processstamen development
GO:0048497biological_processmaintenance of floral organ identity
GO:0048527biological_processlateral root development
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49762.2.S1_a_at--677--7671Chr02:22288984..22289008 (25 bp)
GGGATTGCCTGTTCTAGCTATAGCT
LOC_Os02g36924
Os.49762.2.S1_a_at--387--6591Chr02:22288986..22289010 (25 bp)
GATTGCCTGTTCTAGCTATAGCTTG
LOC_Os02g36924
Os.49762.2.S1_a_at--535--4874Chr11:19423900..19423930 (24 bp)
GCTATAGCTTGATAGCTTAGCTAGC
NONE
Os.49762.2.S1_a_at--688--4891Chr02:22289014..22289038 (25 bp)
GCTTAGCTAGCTTGGTCATTTCTGG
LOC_Os02g36924
Os.49762.2.S1_a_at--744--7811Chr02:22289027..22289051 (25 bp)
GGTCATTTCTGGTGAGAGATCGATC
LOC_Os02g36924
Os.49762.2.S1_a_at--416--1291Chr02:22289043..22289067 (25 bp)
AGATCGATCGAGATAGCGGCGAAGA
LOC_Os02g36924
Os.49762.2.S1_a_at--77--8191Chr02:22289080..22289104 (25 bp)
GGAAGATTGTGATCCGCCGGATCGA
LOC_Os02g36924
Os.49762.2.S1_a_at--1134--4971Chr02:22290123..22290147 (25 bp)
GCATGAAGTCAGTTATAGATCGGTA
LOC_Os02g36924
Os.49762.2.S1_a_at--701--6791Chr02:22290134..22290158 (25 bp)
GTTATAGATCGGTATGGCAAGTCCA
LOC_Os02g36924
Os.49762.2.S1_a_at--189--1271Chr02:22290139..22290163 (25 bp)
AGATCGGTATGGCAAGTCCAAGGAT
LOC_Os02g36924
Os.49762.2.S1_a_at--322--10111Chr02:22290146..22290170 (25 bp)
TATGGCAAGTCCAAGGATGAGCAGC
LOC_Os02g36924
Target Sequence 
GGGATTGCCTGTTCTAGCTATAGCTTGATAGCTTAGCTAGCTTGGTCATTTCTGGTGAGAGATCGATCGAGATAGCGGCG
AAGAAGATGGGGAGGGGGAAGATTGTGATCCGCCGGATCGACAACTCGACGAGCCGGCAGGTGACGTTCTCGAAGCGGAG
GAACGGGATCTTCAAGAAGGCCAAGGAGCTGGCCATCCTCTGCGACGCCGAGGTCGGCCTCATGATCTTCTCCAGCACCG
GCCGCCTCTACGAGTACTCCAGCACCAGCATGAAGTCAGTTATAGATCGGTATGGCAAGTCCAAGGATGAGCAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49762.2.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis