Browse Element(s) Details


Os.49781.1.S1_x_at

Description gb:AK111515.1
DB_XREF= gi:37988178
TID=Os.49781.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49781 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013002E06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013002E06, full insert sequence.
FL= gb:AK111515.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g289809/11WD40-like Beta Propeller Repeat family protein, expressed
LOC_Os03g199901/11WD40-like Beta Propeller Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g28960Os.23203.1.S1_at11/113+16375821..16394233DNA-directed RNA polymerase III 130 kDa polypeptide, putative, expressed
LOC_Os03g28960OsAffx.19953.5.S1_x_at4/113+16375821..16394233DNA-directed RNA polymerase III 130 kDa polypeptide, putative, expressed
LOC_Os03g28960OsAffx.32255.1.A1_at3/113+16375821..16394233DNA-directed RNA polymerase III 130 kDa polypeptide, putative, expressed
LOC_Os03g28960OsAffx.32241.1.A1_at1/113+16375821..16394233DNA-directed RNA polymerase III 130 kDa polypeptide, putative, expressed
LOC_Os03g28969OsAffx.2602.1.S1_at6/113+16398365..16400882hypothetical protein
LOC_Os03g28969Os.5300.1.S1_at1/113+16398365..16400882hypothetical protein
LOC_Os03g28980Os.49781.1.S1_x_at9/113+16404167..16406513WD40-like Beta Propeller Repeat family protein, expressed
LOC_Os03g28980Os.49781.1.S1_at7/113+16404167..16406513WD40-like Beta Propeller Repeat family protein, expressed
LOC_Os03g28990OsAffx.3357.1.S1_s_at11/113+16412303..16414199von Willebrand factor type A domain containing protein, expressed
LOC_Os03g28990Os.51900.1.S1_at11/113+16412303..16414199von Willebrand factor type A domain containing protein, expressed
LOC_Os03g29000NANA3+16415531..16415863hypothetical protein
LOC_Os03g29010OsAffx.25936.1.S1_s_at6/113+16421101..16424140transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g29010OsAffx.25936.7.S1_s_at5/113+16421101..16424140transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g29010OsAffx.25936.2.S1_x_at5/113+16421101..16424140transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g29020Os.10827.1.S1_x_at8/113+16426789..16430606transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g29020Os.46055.2.S1_x_at4/113+16426789..16430606transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49781.1.S1_x_at--25--3732Chr03:16406192..16406216 (25 bp)
CTACGGCGACATCTTCACCGTGGAC
LOC_Os03g28980
Os.49781.1.S1_x_at--610--5811Chr03:16406220..16406244 (25 bp)
GACCCCGACGACATCAGCAAGAACA
LOC_Os03g28980
Os.49781.1.S1_x_at--473--9591Chr03:16406233..16406257 (25 bp)
TCAGCAAGAACAGGGACGTCAGGGC
LOC_Os03g28980
Os.49781.1.S1_x_at--706--5751Chr03:16406247..16406271 (25 bp)
GACGTCAGGGCGTTCCACCGCGTGA
LOC_Os03g28980
Os.49781.1.S1_x_at--911--1091Chr03:16406338..16406362 (25 bp)
AGTGGAGCACGCTGGTGACCACCAA
LOC_Os03g28980
Os.49781.1.S1_x_at--210--5951Chr03:16406342..16406366 (25 bp)
GAGCACGCTGGTGACCACCAAGGAG
LOC_Os03g28980
Os.49781.1.S1_x_at--281--9271NONE
TCCTCCTCCCAAAGAGATGCTGCTA
NONE
Os.49781.1.S1_x_at--527--4271NONE
CCTCCCAAAGAGATGCTGCTAGCTA
NONE
Os.49781.1.S1_x_at--1009--2771Chr03:16406451..16406475 (25 bp)
AAGAGATGCTGCTAGCTAGCTAATT
LOC_Os03g28980
Os.49781.1.S1_x_at--806--9791Chr03:16406475..16406499 (25 bp)
TAAGCAATGCCTAATTATCCAGCCA
LOC_Os03g28980
Os.49781.1.S1_x_at--109--5191Chr03:16406478..16406502 (25 bp)
GCAATGCCTAATTATCCAGCCATAA
LOC_Os03g28980
Target Sequence 
CTACGGCGACATCTTCACCGTGGACATCGACCCCGACGACATCAGCAAGAACAGGGACGTCAGGGCGTTCCACCGCGTGA
CGCACAGCCGCTACGAGAACTCCACGCCGGCGTGGACCACGTTCGCCACCGACGACCCCAACGCGCAGTGGAGCACGCTG
GTGACCACCAAGGAGGCGGCGGCTTACCGTCCGGCCTGCCCCTACGCCCACCCCGACGGCGGCGACAGCTGGCACATGAC
CGGCCACCTCCTCCTCCCAAAGAGATGCTGCTAGCTAGCTAATTAAGCAATGCCTAATTATCCAGCCATAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49781.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis