Browse Element(s) Details


Os.23203.1.S1_at

Description gb:AK073203.1
DB_XREF= gi:32983226
TID=Os.23203.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.23203 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033021H21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033021H21, full insert sequence.
FL= gb:AK073203.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2896011/11DNA-directed RNA polymerase III 130 kDa polypeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g28910OsAffx.25270.3.S1_at11/113+16352011..16352877hypothetical protein
LOC_Os03g28910OsAffx.25270.3.S1_x_at11/113+16352011..16352877hypothetical protein
LOC_Os03g28920OsAffx.3356.1.S1_at11/113+16355344..16355721hypothetical protein
LOC_Os03g28930Os.38884.2.S1_x_at10/113+16357275..16360869transposon protein, putative, Mutator sub-class
LOC_Os03g28940Os.4695.1.S1_s_at11/113+16362456..16364801ZIM motif family protein, expressed
LOC_Os03g28950OsAffx.17052.1.S1_at9/113+16371414..16372751AC transposase, putative
LOC_Os03g28950OsAffx.17052.2.S1_at3/113+16371414..16372751AC transposase, putative
LOC_Os03g28950OsAffx.25414.1.S1_at1/113+16371414..16372751AC transposase, putative
LOC_Os03g28960Os.23203.1.S1_at11/113+16375821..16394233DNA-directed RNA polymerase III 130 kDa polypeptide, putative, expressed
LOC_Os03g28960OsAffx.19953.5.S1_x_at4/113+16375821..16394233DNA-directed RNA polymerase III 130 kDa polypeptide, putative, expressed
LOC_Os03g28960OsAffx.32255.1.A1_at3/113+16375821..16394233DNA-directed RNA polymerase III 130 kDa polypeptide, putative, expressed
LOC_Os03g28960OsAffx.32241.1.A1_at1/113+16375821..16394233DNA-directed RNA polymerase III 130 kDa polypeptide, putative, expressed
LOC_Os03g28969OsAffx.2602.1.S1_at6/113+16398365..16400882hypothetical protein
LOC_Os03g28969Os.5300.1.S1_at1/113+16398365..16400882hypothetical protein
LOC_Os03g28980Os.49781.1.S1_x_at9/113+16404167..16406513WD40-like Beta Propeller Repeat family protein, expressed
LOC_Os03g28980Os.49781.1.S1_at7/113+16404167..16406513WD40-like Beta Propeller Repeat family protein, expressed
LOC_Os03g28990OsAffx.3357.1.S1_s_at11/113+16412303..16414199von Willebrand factor type A domain containing protein, expressed
LOC_Os03g28990Os.51900.1.S1_at11/113+16412303..16414199von Willebrand factor type A domain containing protein, expressed
LOC_Os03g29000NANA3+16415531..16415863hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006306biological_processDNA methylation
GO:0006350biological_processtranscription
GO:0030422biological_processRNA interference, production of siRNA
GO:0031047biological_processRNA-mediated gene silencing
GO:0035194biological_processRNA-mediated posttranscriptional gene silencing
GO:0005634cellular_componentnucleus
GO:0005720cellular_componentnuclear heterochromatin
GO:0016591cellular_componentDNA-directed RNA polymerase II, holoenzyme
GO:0030880cellular_componentRNA polymerase complex
GO:0003677molecular_functionDNA binding
GO:0003899molecular_functionDNA-directed RNA polymerase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23203.1.S1_at--987--2411Chr03:16393420..16393444 (25 bp)
AAAATGTGGCTTGTTAGGCTATTAC
LOC_Os03g28960
Os.23203.1.S1_at--989--4911Chr03:16393460..16393484 (25 bp)
GCTTCCTACTGTTCCATGTGCAAAA
LOC_Os03g28960
Os.23203.1.S1_at--325--6171Chr03:16393507..16393531 (25 bp)
GAGGATGCCGTATGCTTGCAAGCTT
LOC_Os03g28960
Os.23203.1.S1_at--147--9071Chr03:16393519..16393541 (23 bp)
TGCTTGCAAGCTTTTATTCCAGGAG
LOC_Os03g28960
Os.23203.1.S1_at--1097--5411Chr03:16393845..16393869 (25 bp)
GAACGTTGTTCCACGATTGAAGTTA
LOC_Os03g28960
Os.23203.1.S1_at--861--5031Chr03:16393901..16393925 (25 bp)
GCAGAGCTCAAGCACTGTTGGTACA
LOC_Os03g28960
Os.23203.1.S1_at--1160--7171Chr03:16394003..16394027 (25 bp)
GTCGGGATATGTTTGGTTTCTGTAC
LOC_Os03g28960
Os.23203.1.S1_at--705--7851Chr03:16394036..16394060 (25 bp)
GGTAGCTTAGATTTCTTTCTTCATA
LOC_Os03g28960
Os.23203.1.S1_at--321--311Chr03:16394096..16394120 (25 bp)
ATACCAACCAATAGCTTCACATGAG
LOC_Os03g28960
Os.23203.1.S1_at--325--4791Chr03:16394150..16394174 (25 bp)
GCTCCAATGTTAATTTGCTTCCTTC
LOC_Os03g28960
Os.23203.1.S1_at--754--511Chr03:16394188..16394212 (25 bp)
ATCGTTTCCTTGTATGCATCCATAG
LOC_Os03g28960
Target Sequence 
AAAATGTGGCTTGTTAGGCTATTACAATCATAAACTGAAGGCTTCCTACTGTTCCATGTGCAAAAAAGGGAGAAAATATG
GCCAAGATGAGGATGCCGTATGCTTGCAAGCTTTTATTCCAGGAGCTGCAAGCAATGAACGTTGTTCCACGATTGAAGTT
AACTGAAGGATAACTTGAAATACGATGGTCAAGCAGAGCTCAAGCACTGTTGGTACAAGCTTTTGCAGCAAGAAGGCAAG
CTGTAAACATGTCGACGACAGCAATGAACGTCTGAACCTATACATCATTCAGGAGTCGGGATATGTTTGGTTTCTGTACA
GAAGAGAGGTAGCTTAGATTTCTTTCTTCATATGAGGGAGACAAAAGTGCAAGGAAGAAAGAGAAGCATACCAACCAATA
GCTTCACATGAGCTGTACAGTGGAAACGCTTTACTTTGTATGCTCCAATGTTAATTTGCTTCCTTCCTCCTTATCTACCA
TCGTTTCCTTGTATGCATCCATAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23203.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis