Browse Element(s) Details


OsAffx.3356.1.S1_at

Description tigr:9631.m02814
TID=OsAffx.3356.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2892011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g28370NANA3+16325192..16330480retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g28380NANA3+16331869..16334241hypothetical protein
LOC_Os03g28390NANA3+16337530..16338018hypothetical protein
LOC_Os03g28400Os.3933.1.S1_a_at11/113+16338234..16341046Trafficking protein particle complex subunit 3, putative, expressed
LOC_Os03g28910OsAffx.25270.3.S1_at11/113+16352011..16352877hypothetical protein
LOC_Os03g28910OsAffx.25270.3.S1_x_at11/113+16352011..16352877hypothetical protein
LOC_Os03g28920OsAffx.3356.1.S1_at11/113+16355344..16355721hypothetical protein
LOC_Os03g28930Os.38884.2.S1_x_at10/113+16357275..16360869transposon protein, putative, Mutator sub-class
LOC_Os03g28940Os.4695.1.S1_s_at11/113+16362456..16364801ZIM motif family protein, expressed
LOC_Os03g28950OsAffx.17052.1.S1_at9/113+16371414..16372751AC transposase, putative
LOC_Os03g28950OsAffx.17052.2.S1_at3/113+16371414..16372751AC transposase, putative
LOC_Os03g28950OsAffx.25414.1.S1_at1/113+16371414..16372751AC transposase, putative
LOC_Os03g28960Os.23203.1.S1_at11/113+16375821..16394233DNA-directed RNA polymerase III 130 kDa polypeptide, putative, expressed
LOC_Os03g28960OsAffx.19953.5.S1_x_at4/113+16375821..16394233DNA-directed RNA polymerase III 130 kDa polypeptide, putative, expressed
LOC_Os03g28960OsAffx.32255.1.A1_at3/113+16375821..16394233DNA-directed RNA polymerase III 130 kDa polypeptide, putative, expressed
LOC_Os03g28960OsAffx.32241.1.A1_at1/113+16375821..16394233DNA-directed RNA polymerase III 130 kDa polypeptide, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3356.1.S1_at--254--8371Chr03:16355641..16355665 (25 bp)
GGCGGGCGGATCCATCAGTCCTCTA
LOC_Os03g28920
OsAffx.3356.1.S1_at--52--2711Chr03:16355591..16355615 (25 bp)
AAGCTTCTCCCGAGGCCGTGGCGGT
LOC_Os03g28920
OsAffx.3356.1.S1_at--32--7731Chr03:16355569..16355593 (25 bp)
GGTGGCATTGGTGCTCCCGCGGGCA
LOC_Os03g28920
OsAffx.3356.1.S1_at--98--7531Chr03:16355532..16355556 (25 bp)
GTGGCGGCGACAGCGTTTCCGACGA
LOC_Os03g28920
OsAffx.3356.1.S1_at--93--5651Chr03:16355524..16355548 (25 bp)
GACAGCGTTTCCGACGAGCGGATCT
LOC_Os03g28920
OsAffx.3356.1.S1_at--216--1631Chr03:16355521..16355545 (25 bp)
AGCGTTTCCGACGAGCGGATCTGGC
LOC_Os03g28920
OsAffx.3356.1.S1_at--99--10631Chr03:16355476..16355500 (25 bp)
TTCGTCCCAAGCTTCTCTAGCGGTG
LOC_Os03g28920
OsAffx.3356.1.S1_at--500--7231Chr03:16355473..16355497 (25 bp)
GTCCCAAGCTTCTCTAGCGGTGGAT
LOC_Os03g28920
OsAffx.3356.1.S1_at--772--3231Chr03:16355469..16355493 (25 bp)
CAAGCTTCTCTAGCGGTGGATCCGA
LOC_Os03g28920
OsAffx.3356.1.S1_at--322--9512Chr06:14610032..14610058 (23 bp)
TCTCCCACGGATCCGCCGGTGGTGA
NONE
OsAffx.3356.1.S1_at--163--3351Chr03:16355428..16355452 (25 bp)
CACGGATCCGCCGGTGGTGACATCA
LOC_Os03g28920
Target Sequence 
GGCGGGCGGATCCATCAGTCCTCTACCCCTCTCCCTTCCCCTTCGTGCCCAAGCTTCTCCCGAGGCCGTGGCGGTGGCAT
TGGTGCTCCCGCGGGCAGATCCGGCGGAGGTGGCGGCGACAGCGTTTCCGACGAGCGGATCTGGCGGTCCTCTTCCCCCT
CCCCCTTCGTCCCAAGCTTCTCTAGCGGTGGATCCGACGGCGGCGGCTTCTCCCACGGATCCGCCGGTGGTGACATCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3356.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis