Browse Element(s) Details


Os.49782.1.S1_at

Description gb:AK111543.1
DB_XREF= gi:37988206
TID=Os.49782.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49782 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013043E12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013043E12, full insert sequence.
FL= gb:AK111543.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3586011/11Ras-related protein Rab11B, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g35830NANA9+20613276..20613862hypothetical protein
LOC_Os09g35840Os.24098.1.S1_a_at4/119+20619099..20621316RNA-binding protein, putative
LOC_Os09g35840Os.56892.1.S1_x_at4/119+20619099..20621316RNA-binding protein, putative
LOC_Os09g35850Os.56892.1.S1_at11/119+20629236..20633047RNA recognition motif family protein, expressed
LOC_Os09g35850Os.56892.1.S1_x_at10/119+20629236..20633047RNA recognition motif family protein, expressed
LOC_Os09g35860Os.49782.1.S1_at11/119+20637344..20639287Ras-related protein Rab11B, putative, expressed
LOC_Os09g35870Os.57199.1.S1_at11/119+20640984..20642658Auxin-induced protein 22B, putative, expressed
LOC_Os09g35880Os.10164.1.S1_at11/119+20645934..20649503B-box zinc finger family protein, expressed
LOC_Os09g35890Os.23742.1.S1_at11/119+20654226..20658702kinesin motor family protein, putative, expressed
LOC_Os09g35900Os.5394.1.S1_at1/119+20659309..20659557expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005525molecular_functionGTP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49782.1.S1_at--293--8411Chr09:20638689..20638713 (25 bp)
GGCGCCATGGTGGTGTACGACATCA
LOC_Os09g35860
Os.49782.1.S1_at--707--811Chr09:20638695..20638719 (25 bp)
ATGGTGGTGTACGACATCACGCGGC
LOC_Os09g35860
Os.49782.1.S1_at--763--8091Chr09:20639047..20639071 (25 bp)
GGACCACGCTGGACGTCGGCTCCAT
LOC_Os09g35860
Os.49782.1.S1_at--145--2751Chr09:20639091..20639115 (25 bp)
AAGAAGAGCTCGCAGTGCTCCTGCT
LOC_Os09g35860
Os.49782.1.S1_at--536--1131Chr09:20639104..20639128 (25 bp)
AGTGCTCCTGCTCGTGAGCGACACA
LOC_Os09g35860
Os.49782.1.S1_at--850--3991Chr09:20639116..20639140 (25 bp)
CGTGAGCGACACACAGAGACTGGAT
LOC_Os09g35860
Os.49782.1.S1_at--631--5991Chr09:20639131..20639155 (25 bp)
GAGACTGGATGTTCGCTCGTGTAAT
LOC_Os09g35860
Os.49782.1.S1_at--668--10631Chr09:20639142..20639166 (25 bp)
TTCGCTCGTGTAATGTTTTTGTTTC
LOC_Os09g35860
Os.49782.1.S1_at--387--5671Chr09:20639167..20639191 (25 bp)
GACATATCGATTATTACACATTCAC
LOC_Os09g35860
Os.49782.1.S1_at--673--3591Chr09:20639185..20639209 (25 bp)
CATTCACATCATTTCACCTCGCGTT
LOC_Os09g35860
Os.49782.1.S1_at--824--3351Chr09:20639199..20639223 (25 bp)
CACCTCGCGTTCTTGTCAATTATAG
LOC_Os09g35860
Target Sequence 
GGCGCCATGGTGGTGTACGACATCACGCGGCGGCGGACGTTCGAGAACGTGGCGCGGTGGGTGGAGGAGCTCCGGGCGCA
CGCCGATGGCTCCACCGTGGTGGCGCTGATCGGGAACAAGGCCGACATGCCGGCGGGCCGGCGCGAGGTCGCCGCCGACG
AGGCCGCGCGGTTCGCGGAGGAGCAGGGGCTCTTCTTCTCCGAGGCGTCCGCGCTGTCGGGCGACAACGTGGACCGCGCC
TTCCTCACGCTGCTCGAGGAGATCTTCGCCGTCGTGTCGCGCAGGGCGCTGGAGCTCGACGAGGCACGGCGGATGCGCGA
CGGCGGCGCCGGCGGCGGCGAGGTGCTGTCGCTGAAGGGGACCACGCTGGACGTCGGCTCCATCATGGAGACCAGCGCCA
TGAAGAAGAGCTCGCAGTGCTCCTGCTCGTGAGCGACACACAGAGACTGGATGTTCGCTCGTGTAATGTTTTTGTTTCGA
CATATCGATTATTACACATTCACATCATTTCACCTCGCGTTCTTGTCAATTATAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49782.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis