Browse Element(s) Details


Os.49788.1.S1_at

Description gb:AK111573.1
DB_XREF= gi:37988236
TID=Os.49788.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49788 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-106-B05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013073E13, full insert sequence.
FL= gb:AK111573.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5511010/1126S proteasome non-ATPase regulatory subunit 10, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g55090Os.11216.1.S1_at3/113+31271345..31278112glycogen/starch/alpha-glucan phosphorylases family protein, expressed
LOC_Os03g55094NANA3+31282257..31282562hypothetical protein
LOC_Os03g55100Os.49313.1.S1_a_at11/113+31283883..31289753Cyclic nucleotide-gated ion channel 2, putative, expressed
LOC_Os03g55100OsAffx.23819.2.S1_x_at1/113+31283883..31289753Cyclic nucleotide-gated ion channel 2, putative, expressed
LOC_Os03g55110Os.49788.1.S1_at10/113+31293499..3129634926S proteasome non-ATPase regulatory subunit 10, putative, expressed
LOC_Os03g55110Os.49788.2.S1_x_at9/113+31293499..3129634926S proteasome non-ATPase regulatory subunit 10, putative, expressed
LOC_Os03g55120Os.50909.2.S1_s_at11/113+31298371..31299417Plastocyanin-like domain containing protein, expressed
LOC_Os03g55120Os.50909.1.S1_at11/113+31298371..31299417Plastocyanin-like domain containing protein, expressed
LOC_Os03g55130Os.26714.1.S1_at9/113+31317009..31320400expressed protein
LOC_Os03g55140Os.54730.1.S1_at10/113+31321240..31326138transducin family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009651biological_processresponse to salt stress
GO:0009932biological_processcell tip growth
GO:0000035molecular_functionacyl binding
GO:0005515molecular_functionprotein binding
GO:0016417molecular_functionS-acyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49788.1.S1_at--1048--5531NONE
GAAAGATAAGTTTGGGTGCACACCC
NONE
Os.49788.1.S1_at--1002--6451Chr03:31295580..31295600 (21 bp)
GATAAGTTTGGGTGCACACCCTTAC
LOC_Os03g55110
Os.49788.1.S1_at--634--2831Chr03:31295580..31295603 (24 bp)
AAGTTTGGGTGCACACCCTTACATA
LOC_Os03g55110
Os.49788.1.S1_at--158--6871Chr03:31295581..31295605 (25 bp)
GTTTGGGTGCACACCCTTACATAGA
LOC_Os03g55110
Os.49788.1.S1_at--376--7711Chr03:31295585..31295609 (25 bp)
GGGTGCACACCCTTACATAGAGCTG
LOC_Os03g55110
Os.49788.1.S1_at--528--7771Chr03:31295586..31295610 (25 bp)
GGTGCACACCCTTACATAGAGCTGC
LOC_Os03g55110
Os.49788.1.S1_at--1105--9011Chr03:31295588..31295612 (25 bp)
TGCACACCCTTACATAGAGCTGCCA
LOC_Os03g55110
Os.49788.1.S1_at--577--2171Chr03:31295591..31295615 (25 bp)
ACACCCTTACATAGAGCTGCCAGTA
LOC_Os03g55110
Os.49788.1.S1_at--246--1811Chr03:31295593..31295617 (25 bp)
ACCCTTACATAGAGCTGCCAGTACA
LOC_Os03g55110
Os.49788.1.S1_at--921--10471Chr03:31295597..31295621 (25 bp)
TTACATAGAGCTGCCAGTACAGGAA
LOC_Os03g55110
Os.49788.1.S1_at--905--9791Chr03:31295602..31295626 (25 bp)
TAGAGCTGCCAGTACAGGAAATGCT
LOC_Os03g55110
Target Sequence 
GAAAGATAAGTTTGGGTGCACACCCTTACATAGAGCTGCCAGTACAGGAAATGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49788.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis