Browse Element(s) Details


Os.49932.1.S1_at

Description gb:AK119394.1
DB_XREF= gi:37989017
TID=Os.49932.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49932 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-132-D05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-132-D05, full insert sequence.
FL= gb:AK119394.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4612010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g46070Os.52601.1.S1_at11/1111+27377785..27384128NB-ARC domain containing protein, expressed
LOC_Os11g46080Os.54361.1.S1_at11/1111+27387427..27394276NB-ARC domain containing protein, expressed
LOC_Os11g46080OsAffx.5663.1.S1_at1/1111+27387427..27394276NB-ARC domain containing protein, expressed
LOC_Os11g46090NANA11+27396108..27400052retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g46100OsAffx.19401.1.S1_at11/1111+27400653..27402236resistance protein, putative
LOC_Os11g46110NANA11+27403569..27403918hypothetical protein
LOC_Os11g46120Os.49932.1.S1_at10/1111+27404717..27407585expressed protein
LOC_Os11g46130OsAffx.7425.1.S1_at11/1111+27413256..27414209RGH1A, putative
LOC_Os11g46140OsAffx.19402.1.S1_at11/1111+27421923..27424237hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49932.1.S1_at--987--5911Chr11:27405237..27405261 (25 bp)
GAGCATGTGCTTGACTATAGGACAA
LOC_Os11g46120
Os.49932.1.S1_at--453--5871Chr11:27405085..27405109 (25 bp)
GAGCGAGAACGTATCGAGACATCTA
LOC_Os11g46120
Os.49932.1.S1_at--287--9831Chr11:27404931..27404955 (25 bp)
TAAAGATTAACCCACCTCAAGGCGA
LOC_Os11g46120
Os.49932.1.S1_at--1036--2751Chr11:27404907..27404931 (25 bp)
AAGACCATATTTACTATTTCCGGAG
LOC_Os11g46120
Os.49932.1.S1_at--917--3651Chr11:27404894..27404918 (25 bp)
CTATTTCCGGAGACGGCATAGGCGT
LOC_Os11g46120
Os.49932.1.S1_at--167--7411Chr11:27404871..27404895 (25 bp)
GTGATACACGGCGAACTGCCCTATA
LOC_Os11g46120
Os.49932.1.S1_at--565--5471NONE
GAACTGCCCTATACGATGCATTTTG
NONE
Os.49932.1.S1_at--870--8131Chr11:27404801..27404825 (25 bp)
GGACAGGTTGCAGCATTCGCATTAC
LOC_Os11g46120
Os.49932.1.S1_at--514--91Chr11:27404787..27404811 (25 bp)
ATTCGCATTACTCTTTTCATCCTAT
LOC_Os11g46120
Os.49932.1.S1_at--766--9571Chr11:27404771..27404795 (25 bp)
TCATCCTATGCGTGAACCCGGTGAA
LOC_Os11g46120
Os.49932.1.S1_at--579--5355Chr11:27404749..27404773 (25 bp)
GAAGATAATCTCCAAAGCACCATAT
LOC_Os11g46120
Target Sequence 
GAGCATGTGCTTGACTATAGGACAAACCCTAGGGATTACTAACTAAGCTAAGTTTGATTTGGTTCAAACTTAATGCTTTA
AGGGGGTAGATTTAAATTACGAACACACATTATATGCTATTTGTATATTTCAGGTCTATGGTAGAAAGGCATGAGCGAGA
ACGTATCGAGACATCTATATCTATCCATGATAATGATTGTACTGATCAGTTGATAAGGTTGATGAAAAAGTTGAAGATAA
ATGAACAACCGGAGTTCTATTCACATGCTTATCAGAAGGGAGATCTCTAGGAATACGATATGACTATAAAGATTAACCCA
CCTCAAGGCGAAGACCATATTTACTATTTCCGGAGACGGCATAGGCGTGATACACGGCGAACTGCCCTATACGATGCATT
TTGGGAGGAATTCTTATGCCTCAATCATATTTACCAGGACAGGTTGCAGCATTCGCATTACTCTTTTCATCCTATGCGTG
AACCCGGTGAAGATAATCTCCAAAGCACCATAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49932.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis