Browse Element(s) Details


Os.49941.1.S1_at

Description gb:AK119407.1
DB_XREF= gi:37989030
TID=Os.49941.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49941 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-132-F02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-132-F02, full insert sequence.
FL= gb:AK119407.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4339011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g43360OsAffx.19350.1.S1_x_at11/1111+25662189..25663480Tropinone reductase homolog At1g07440, putative
LOC_Os11g43360OsAffx.19350.1.S1_at11/1111+25662189..25663480Tropinone reductase homolog At1g07440, putative
LOC_Os11g43370NANA11+25674646..25680747retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g43380OsAffx.21897.5.S1_x_at4/1111+25681064..25684004retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g43390Os.49941.1.S1_at11/1111+25688350..25691231expressed protein
LOC_Os11g43400Os.20602.2.S1_x_at9/1111+25693857..25695935hAT family dimerisation domain containing protein
LOC_Os11g43404Os.32717.1.S1_at11/1111+25696774..25699226expressed protein
LOC_Os11g43404Os.51236.1.S1_x_at1/1111+25696774..25699226expressed protein
LOC_Os11g43410OsAffx.19352.1.S1_at11/1111+25706256..25708996NB-ARC domain containing protein, expressed
LOC_Os11g43420Os.53698.1.S1_at8/1111+25710912..25713973NB-ARC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49941.1.S1_at--232--8331Chr11:25688915..25688939 (25 bp)
GGCTGCTTCGCAAATCATACATCGA
LOC_Os11g43390
Os.49941.1.S1_at--584--3811Chr11:25688844..25688868 (25 bp)
CTCCTGCTTGATCATGTCTCTGATA
LOC_Os11g43390
Os.49941.1.S1_at--119--4451Chr11:25688814..25688838 (25 bp)
GCCTTGTTGATCAAAGCCCGTGCAG
LOC_Os11g43390
Os.49941.1.S1_at--90--4111Chr11:25688750..25688774 (25 bp)
CGAAGACGTTGGTGACGATCTCCCC
LOC_Os11g43390
Os.49941.1.S1_at--156--7671Chr11:25688712..25688736 (25 bp)
GGGATCAATAACACGGCCATACTTC
LOC_Os11g43390
Os.49941.1.S1_at--713--6191Chr11:25688623..25688647 (25 bp)
GAGGAAGATCACTCCGGACATCATC
LOC_Os11g43390
Os.49941.1.S1_at--55--1291Chr11:25688526..25688550 (25 bp)
AGATCTCATGAAGTGCGTGTTCCCC
LOC_Os11g43390
Os.49941.1.S1_at--828--6391Chr11:25688492..25688516 (25 bp)
GATCGATCTATATACGTTGCTTCAT
LOC_Os11g43390
Os.49941.1.S1_at--323--9551Chr11:25688407..25688431 (25 bp)
TCTATCTGGCCGGTTCTGGTAAGAA
LOC_Os11g43390
Os.49941.1.S1_at--71--3091Chr11:25688380..25688404 (25 bp)
AATAATCGCAAGTTCACTGCCGCGT
LOC_Os11g43390
Os.49941.1.S1_at--722--3331Chr11:25688366..25688390 (25 bp)
CACTGCCGCGTGTATATATATTCAT
LOC_Os11g43390
Target Sequence 
GGCTGCTTCGCAAATCATACATCGAAAGCGAGGTCACCCTCGAGGAGGGGGAGTTCGGGGAGCTGAGGCTCCTCCTGCTT
GATCATGTCTCTGATAAGACGGCCTTGTTGATCAAAGCCCGTGCAGCTCCCAAGCTGGAGAAGATTGTGTGGAACTTGAA
CAAGACGAAGACGTTGGTGACGATCTCCCCCGACGACATTGCTGGGATCAATAACACGGCCATACTTCGCTTCAAGGCCG
CCGATGCAGCAGCTCCTACGAAGGAGAAGGTTGACTGGAACTGCAACAGCACGAGGAAGATCACTCCGGACATCATCCGG
GGTTCAATCGAATTCAATCAAGTCCAAGAGGGAGCTCAAGAATTCCTCAAGTAAGTCCGAGGGAGCTCAAGATCTCATGA
AGTGCGTGTTCCCCTTACCACGCGATCGATCTATATACGTTGCTTCATCACAGTAGAAGGAGACCAGAATGTGGAAAGAA
TAATTAAATGAAGACCTACTTACATATTTCTATCTGGCCGGTTCTGGTAAGAATTAATAATCGCAAGTTCACTGCCGCGT
GTATATATATTCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49941.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis