Browse Element(s) Details


Os.49944.1.S1_at

Description gb:AK119413.1
DB_XREF= gi:37989036
TID=Os.49944.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49944 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-132-F11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-132-F11, full insert sequence.
FL= gb:AK119413.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5718010/11oxidoreductase, 2OG-Fe oxygenase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g57140Os.14699.1.S1_at8/114+33821058..33830470kinesin-like calmodulin binding protein, putative, expressed
LOC_Os04g57150Os.27939.1.A1_at11/114+33835254..33839085Tafazzin, putative, expressed
LOC_Os04g57160NANA4+33840976..33843492oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os04g57170OsAffx.14454.1.S1_at11/114+33845694..33846643hypothetical protein
LOC_Os04g57180Os.49944.1.S1_at10/114+33848590..33851736oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os04g57190OsAffx.14455.1.S1_s_at11/114+33854103..33858227Ubiquitin carboxyl-terminal hydrolase, family 1 protein, expressed
LOC_Os04g57190Os.24656.1.S1_at11/114+33854103..33858227Ubiquitin carboxyl-terminal hydrolase, family 1 protein, expressed
LOC_Os04g57190OsAffx.14455.1.S1_at9/114+33854103..33858227Ubiquitin carboxyl-terminal hydrolase, family 1 protein, expressed
LOC_Os04g57200Os.7115.1.S1_a_at11/114+33861558..33862845heavy metal-associated domain containing protein, expressed
LOC_Os04g57210Os.9650.1.A1_at11/114+33864372..33868483Actin family protein, expressed
LOC_Os04g57220Os.22723.1.S1_a_at11/114+33868683..33871611Ubiquitin-conjugating enzyme E2-17 kDa, putative, expressed
LOC_Os04g57220Os.22723.3.S1_x_at5/114+33868683..33871611Ubiquitin-conjugating enzyme E2-17 kDa, putative, expressed
LOC_Os04g57230Os.20204.4.S1_at11/114+33872604..33876347regulatory protein RecX containing protein, expressed
LOC_Os04g57230Os.5935.1.S1_at11/114+33872604..33876347regulatory protein RecX containing protein, expressed
LOC_Os04g57240Os.51414.1.S1_at4/114+33876674..33877784hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0009058biological_processbiosynthesis
GO:0009813biological_processflavonoid biosynthesis
GO:0019748biological_processsecondary metabolism
GO:0016706molecular_functionoxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49944.1.S1_at--1094--4171Chr04:33849145..33849169 (25 bp)
CCCAGGGCTTGAGGTGATGCACCAT
LOC_Os04g57180
Os.49944.1.S1_at--1098--5991Chr04:33849062..33849086 (25 bp)
GAGACCACCTGGAAGTGTTGAGCAA
LOC_Os04g57180
Os.49944.1.S1_at--311--1491Chr04:33849042..33849066 (25 bp)
AGCAATGGCCAGCTCAAGTCCCTTG
LOC_Os04g57180
Os.49944.1.S1_at--637--6711Chr04:33849006..33849030 (25 bp)
GTTCTCAACCCAAACGAGTCAAGGA
LOC_Os04g57180
Os.49944.1.S1_at--684--6531Chr04:33848983..33849007 (25 bp)
GATTTCTATTGCCAGCATCCATGGT
LOC_Os04g57180
Os.49944.1.S1_at--242--431Chr04:33848948..33848972 (25 bp)
ATGAAGAGGTCCACTGCGCCGAAGA
LOC_Os04g57180
Os.49944.1.S1_at--1142--8951Chr04:33848914..33848938 (25 bp)
TGAACACCACCCCAAAATGTACAGG
LOC_Os04g57180
Os.49944.1.S1_at--157--8191Chr04:33848889..33848913 (25 bp)
GGAAGCAGCTTCCAGGACTTCCTGG
LOC_Os04g57180
Os.49944.1.S1_at--213--8531NONE
TGGACTTCCTGCCAGCAGACATGAA
NONE
Os.49944.1.S1_at--551--5991Chr04:33848823..33848847 (25 bp)
GAGAGCCTCAGGATCGACAAACCCT
LOC_Os04g57180
Os.49944.1.S1_at--79--7091Chr04:33848655..33848679 (25 bp)
GTCAATCTGTACTGTGCAACACTGT
LOC_Os04g57180
Target Sequence 
CCCAGGGCTTGAGGTGATGCACCATGAGGATGATGCCTGGACATCTGTCCCTGCTATCCCTGGGGCTCTCCATGTCCATG
TAGGAGACCACCTGGAAGTGTTGAGCAATGGCCAGCTCAAGTCCCTTGTCCATCGAGCCGTTCTCAACCCAAACGAGTCA
AGGATTTCTATTGCCAGCATCCATGGTCTCTCGATGGATGAAGAGGTCCACTGCGCCGAAGAGCTCGTCGATGAACACCA
CCCCAAAATGTACAGGGGAAGCAGCTTCCAGGACTTCCTGGACTTCCTGCCAGCAGACATGAACAGGTATAGGAGGTATG
TCGAGAGCCTCAGGATCGACAAACCCTGAAGAGGAACAGTGGTAGTGCTGTATCAGAACATATATAGCAAGATGGCATTA
TTCGGATAAAGTATTTAAACCACCTAAAAACTCCTACTTCGGGAAGTTTGTTCGACTTTATGTTGGATTGTTGGTCAAAG
AAAAAGTGATGTCAATCTGTACTGTGCAACACTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49944.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis