Browse Element(s) Details


Os.49962.1.S1_at

Description gb:AK119441.1
DB_XREF= gi:37989064
TID=Os.49962.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49962 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-133-C04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-133-C04, full insert sequence.
FL= gb:AK119441.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2003011/11group II intron splicing factor CRS1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g19980OsAffx.15508.1.S1_at11/116+11452024..11460167Myb-like DNA-binding domain containing protein, expressed
LOC_Os06g19980Os.18071.1.S1_s_at11/116+11452024..11460167Myb-like DNA-binding domain containing protein, expressed
LOC_Os06g19980Os.18071.1.S1_at11/116+11452024..11460167Myb-like DNA-binding domain containing protein, expressed
LOC_Os06g19990Os.12376.1.S1_at11/116+11460524..11463788expressed protein
LOC_Os06g19990Os.3053.1.A1_at1/116+11460524..11463788expressed protein
LOC_Os06g20000OsAffx.15509.1.S1_at11/116+11468461..11468730hypothetical protein
LOC_Os06g20010OsAffx.4877.1.S1_at11/116+11473474..11473743RNA recognition motif, putative
LOC_Os06g20010OsAffx.4877.1.S1_x_at11/116+11473474..11473743RNA recognition motif, putative
LOC_Os06g20020NANA6+11475505..11476803Zinc finger, C2H2 type family protein, expressed
LOC_Os06g20030Os.49962.1.S1_at11/116+11482109..11485822group II intron splicing factor CRS1, putative, expressed
LOC_Os06g20030Os.39087.1.S1_at1/116+11482109..11485822group II intron splicing factor CRS1, putative, expressed
LOC_Os06g20040Os.50300.1.S1_at11/116+11485981..11493270Eukaryotic aspartyl protease family protein, expressed
LOC_Os06g20040Os.50300.1.S1_s_at11/116+11485981..11493270Eukaryotic aspartyl protease family protein, expressed
LOC_Os06g20040Os.17403.1.S1_a_at1/116+11485981..11493270Eukaryotic aspartyl protease family protein, expressed
LOC_Os06g20050NANA6+11497993..11502824NB-ARC domain containing protein
LOC_Os06g20060OsAffx.15510.1.S1_at11/116+11503386..11506370expressed protein
LOC_Os06g20070OsAffx.4878.1.S1_at11/116+11508924..11509777hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49962.1.S1_at--789--871Chr06:11485237..11485261 (25 bp)
ATGGCCGGCTCCTAGACAAATCTAT
LOC_Os06g20030
Os.49962.1.S1_at--695--6851Chr06:11485272..11485296 (25 bp)
GTTTGCTGTTAAGCTCCAGTGACAT
LOC_Os06g20030
Os.49962.1.S1_at--247--7351Chr06:11485290..11485314 (25 bp)
GTGACATAACGCCTGCAACTGCAAG
LOC_Os06g20030
Os.49962.1.S1_at--1049--2531Chr06:11485306..11485330 (25 bp)
AACTGCAAGCAGATCCCATGTGGTG
LOC_Os06g20030
Os.49962.1.S1_at--651--6331Chr06:11485349..11485373 (25 bp)
GATGCATTCCTAGCGTCTTCTTTTT
LOC_Os06g20030
Os.49962.1.S1_at--817--10491Chr06:11485388..11485412 (25 bp)
TTAAGCCCCAACCATTGACATGATC
LOC_Os06g20030
Os.49962.1.S1_at--472--5411Chr06:11485447..11485471 (25 bp)
GAAGCTGATGCCATACCAATCGACT
LOC_Os06g20030
Os.49962.1.S1_at--628--9831Chr06:11485484..11485508 (25 bp)
TAAATGTCACTCGTTGGTTCCAGTC
LOC_Os06g20030
Os.49962.1.S1_at--472--7911Chr06:11485499..11485523 (25 bp)
GGTTCCAGTCCTTGTCATGGTGCAT
LOC_Os06g20030
Os.49962.1.S1_at--869--6551Chr06:11485601..11485625 (25 bp)
GATTACTGGCATCCTATGAGCTAGT
LOC_Os06g20030
Os.49962.1.S1_at--1065--8031Chr06:11485650..11485674 (25 bp)
GGAGTTGTTCACCACTTAGCGTTGT
LOC_Os06g20030
Target Sequence 
ATGGCCGGCTCCTAGACAAATCTATCTGCAGTGTTGTTTGCTGTTAAGCTCCAGTGACATAACGCCTGCAACTGCAAGCA
GATCCCATGTGGTGCCTTTCAGCTTCACTGGGGATGCATTCCTAGCGTCTTCTTTTTTCTCTGTTAGGTATTTAAGCCCC
AACCATTGACATGATCTGGTTGTATCCGCCTCAACAGGGCCCTGATTGATGAAGCTGATGCCATACCAATCGACTCCAAA
TGATTCCTAAATGTCACTCGTTGGTTCCAGTCCTTGTCATGGTGCATAAAGCAAGGTAATCAGACGAATCAGTCATCACA
TAGAACCGAATATTGTGCAGAGTTTAGCAGCATCTGCTTGGCATGATTACTGGCATCCTATGAGCTAGTGTAACTGTAGA
CCTGATCATCTGTGGAGTTGTTCACCACTTAGCGTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49962.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis