Browse Element(s) Details


Os.49994.1.S2_at

Description gb:AK119506.1
DB_XREF= gi:37989129
TID=Os.49994.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.49994 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:006-208-B07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-134-F05, full insert sequence.
FL= gb:AK119506.1 gb:AK061138.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1488011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g14840OsAffx.3245.1.S1_at11/113+8066289..8067785CsPK3, putative, expressed
LOC_Os03g14850OsAffx.12866.1.S1_at11/113+8075592..8077817SRF-type transcription factor family protein, expressed
LOC_Os03g14850Os.18922.1.S1_at11/113+8075592..8077817SRF-type transcription factor family protein, expressed
LOC_Os03g14860NANA3+8080625..8081983G-patch domain containing protein, expressed
LOC_Os03g14880Os.49994.1.S1_at11/113+8085393..8087434expressed protein
LOC_Os03g14880Os.49994.1.S2_at11/113+8085393..8087434expressed protein
LOC_Os03g14890OsAffx.12867.1.S1_s_at11/113+8091183..8096795expressed protein
LOC_Os03g14890OsAffx.12867.1.S1_at11/113+8091183..8096795expressed protein
LOC_Os03g14890Os.50208.1.S1_at10/113+8091183..8096795expressed protein
LOC_Os03g14900Os.21188.1.A1_at11/113+8101302..8105056NB-ARC domain containing protein, expressed
LOC_Os03g14900Os.12301.1.S1_at1/113+8101302..8105056NB-ARC domain containing protein, expressed
LOC_Os03g14910Os.11804.1.S1_at11/113+8109465..8113280Tryptophan/tyrosine permease family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.49994.1.S2_at--364--4951Chr03:8085894..8085918 (25 bp)
GCATAAGCATGTCCGGGTTAGTACC
LOC_Os03g14880
Os.49994.1.S2_at--4--7891Chr03:8085865..8085889 (25 bp)
GGTTAGGTCAGAGTGCCACCATTTT
LOC_Os03g14880
Os.49994.1.S2_at--435--9491Chr03:8085722..8085746 (25 bp)
TCTGCGAGCCAGTTCTTGGAGGCTT
LOC_Os03g14880
Os.49994.1.S2_at--626--8011Chr03:8085705..8085729 (25 bp)
GGAGGCTTCCTCTCTGAGAATTGTT
LOC_Os03g14880
Os.49994.1.S2_at--743--3171Chr03:8085687..8085711 (25 bp)
AATTGTTTCCTTATGCTCTTTCTCG
LOC_Os03g14880
Os.49994.1.S2_at--588--7111Chr03:8085660..8085684 (25 bp)
GTCAGCTTGTCATCAATCAATCCTT
LOC_Os03g14880
Os.49994.1.S2_at--358--3191Chr03:8085643..8085667 (25 bp)
CAATCCTTCACCAGTTTGAGCCGAA
LOC_Os03g14880
Os.49994.1.S2_at--1126--6611Chr03:8085604..8085628 (25 bp)
GTTGGAGCTTTCACCTGATGTCTCA
LOC_Os03g14880
Os.49994.1.S2_at--1111--9671Chr03:8085582..8085606 (25 bp)
TCACCTGGTTGCGATTTGAGCCAAT
LOC_Os03g14880
Os.49994.1.S2_at--416--3671Chr03:8085432..8085456 (25 bp)
CTTTTGTCGCATAGTATTTGGCCCT
LOC_Os03g14880
Os.49994.1.S2_at--465--8411Chr03:8085413..8085437 (25 bp)
GGCCCTACAATTCGATCTGCAATGA
LOC_Os03g14880
Target Sequence 
GCATAAGCATGTCCGGGTTAGTACCCTTAGGTTAGGTCAGAGTGCCACCATTTTGGCAGATGAGAATGGTGCCATGAGAA
GTGAATGGGACAAACCGGCAATGATGCAGTGACAATGTGGTGGTTCAGGACATGTCAAGTTTGATCAAGCAAGGACATCA
CAACTGATGGCTTCTGCGAGCCAGTTCTTGGAGGCTTCCTCTCTGAGAATTGTTTCCTTATGCTCTTTCTCGTTGTCAGC
TTGTCATCAATCAATCCTTCACCAGTTTGAGCCGAAGTGGTTGGAGCGTGGTTGGAGCTTTCACCTGATGTCTCACCTGG
TTGCGATTTGAGCCAATGCAAGAACAGCACATAAGTACATACTCACTGCAGTAAACTGATGCAAGGACTGCAGAGAATCT
GATTCTGATGAAATGAAATTGAAGGGTGGCGACAATGAGTTTTAGAAGTGATAGTAAATGTACTTTTGTCGCATAGTATT
TGGCCCTACAATTCGATCTGCAATGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.49994.1.S2_at     

Putative homologies in rice

Putative homologies in arabidopsis