Browse Element(s) Details


Os.5004.1.S1_at

Description gb:AK066615.1
DB_XREF= gi:32976633
TID=Os.5004.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.5004 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013072I23, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013072I23, full insert sequence.
FL= gb:AK066615.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5939010/11Calcium-dependent protein kinase, isoform AK1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g59340Os.14979.1.S1_at11/113+33718947..33725306Cellulose synthase A catalytic subunit 3, putative, expressed
LOC_Os03g59340Os.14979.1.S2_at11/113+33718947..33725306Cellulose synthase A catalytic subunit 3, putative, expressed
LOC_Os03g59350OsAffx.13550.1.S1_s_at11/113+33726843..33728494UDP-glucose:flavonoid-O-glucosyltransferase, putative, expressed
LOC_Os03g59360Os.10572.1.S1_at11/113+33729890..33731707Remorin, C-terminal region family protein, expressed
LOC_Os03g59370OsAffx.25766.1.S1_at11/113+33735723..33736800Ubiquitin family protein
LOC_Os03g59380OsAffx.25767.1.S1_s_at10/113+33737883..33738699Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os03g59390Os.5004.1.S1_at10/113+33744763..33749033Calcium-dependent protein kinase, isoform AK1, putative, expressed
LOC_Os03g59400OsAffx.13551.1.S1_at10/113+33750953..33751357hypothetical protein
LOC_Os03g59410NANA3+33756437..33762591retrotransposon protein, putative, unclassified
LOC_Os03g59420NANA3+33763220..33766510retrotransposon protein, putative, unclassified
LOC_Os03g59430Os.52136.1.S1_at11/113+33768444..33773080Raffinose synthase or seed imbibition protein Sip1 containing protein, expressed
LOC_Os03g59440Os.4965.1.S1_at11/113+33773568..33774433Dirigent-like protein, expressed
LOC_Os03g59440Os.30611.1.S1_at1/113+33773568..33774433Dirigent-like protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0004685molecular_functioncalcium- and calmodulin-dependent protein kinase activity
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5004.1.S1_at--914--5291Chr03:33747954..33747978 (25 bp)
GAAGGCTTTCTCATATTTTGACCAA
LOC_Os03g59390
Os.5004.1.S1_at--845--9771Chr03:33748587..33748611 (25 bp)
TAAGCTACGACGAGTTTGCCGTCAT
LOC_Os03g59390
Os.5004.1.S1_at--217--4251Chr03:33748605..33748629 (25 bp)
CCGTCATGATGAAGGCCGGCACTGA
LOC_Os03g59390
Os.5004.1.S1_at--882--7371Chr03:33748710..33748734 (25 bp)
GTGACGACACGCAATAGACTGGACA
LOC_Os03g59390
Os.5004.1.S1_at--681--3891Chr03:33748767..33748791 (25 bp)
CTGTGTGCTGGCTGTTACATTATTT
LOC_Os03g59390
Os.5004.1.S1_at--1083--6791Chr03:33748835..33748859 (25 bp)
GTTTTGTGCTTACCAGCAGCGATTA
LOC_Os03g59390
Os.5004.1.S1_at--703--6531Chr03:33748855..33748879 (25 bp)
GATTATATTTGTCAGTCAGGCGGCA
LOC_Os03g59390
Os.5004.1.S1_at--744--9631Chr03:33748870..33748894 (25 bp)
TCAGGCGGCAGATATGTATGTACCC
LOC_Os03g59390
Os.5004.1.S1_at--76--7451Chr03:33748923..33748947 (25 bp)
GTGTGCTTACAGTTTACTAGACCAG
LOC_Os03g59390
Os.5004.1.S1_at--536--4691Chr03:33748994..33749018 (25 bp)
GCGGCGTGAAATTCTCAACTCGTTC
LOC_Os03g59390
Os.5004.1.S1_at--230--2551Chr03:33749010..33749034 (25 bp)
AACTCGTTCATCCTGTTGTCATCCA
NONE
Target Sequence 
GAAGGCTTTCTCATATTTTGACCAAAATAAGAGTGGTTACATAGAAATTGAAGAGCTTAGAGAGGCCTTGGTTGATGAAA
TAGATGGCAATGATGAAGACATTATTAATAGCATCATCCGTGATGTAGATACAGACNAGGATGGGAAAATAAGCTACGAC
GAGTTTGCCGTCATGATGAAGGCCGGCACTGACTGGAGGAAGGCATCTAGGCAGTNNNNANNNCNAAGGTTCAGTAACCT
CAGTCTGAAGCTTCAAAAGGACGGATCCATCNGTGACGACACGCAATAGACTGGACAGAGAAAAAAACTACGCTTACGTT
TTTTCTTTGCTGTGTGCTGGCTGTTACATTATTTTTTCACACAGTAACTTAGTGGCTTTGTATAGATAGCATTTGTGGTT
TTGTGCTTACCAGCAGCGATTATATTTGTCAGTCAGGCGGCAGATATGTATGTACCCNAAAGAGGGCGGGATGGGGAAGC
AGATGGTGTGCTTACAGTTTACTAGACCAGAATTATTGGTACAATTGTTTGTAGTTTTGTACGTACCATAATACAAGCGG
CGTGAAATTCTCAACTCGTTCATCCTGTTGTCATCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5004.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis