Browse Element(s) Details


Os.52136.1.S1_at

Description gb:AK065100.1
DB_XREF= gi:32975118
TID=Os.52136.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52136 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013001N01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013001N01, full insert sequence.
FL= gb:AK065100.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5943011/11Raffinose synthase or seed imbibition protein Sip1 containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g59390Os.5004.1.S1_at10/113+33744763..33749033Calcium-dependent protein kinase, isoform AK1, putative, expressed
LOC_Os03g59400OsAffx.13551.1.S1_at10/113+33750953..33751357hypothetical protein
LOC_Os03g59410NANA3+33756437..33762591retrotransposon protein, putative, unclassified
LOC_Os03g59420NANA3+33763220..33766510retrotransposon protein, putative, unclassified
LOC_Os03g59430Os.52136.1.S1_at11/113+33768444..33773080Raffinose synthase or seed imbibition protein Sip1 containing protein, expressed
LOC_Os03g59440Os.4965.1.S1_at11/113+33773568..33774433Dirigent-like protein, expressed
LOC_Os03g59440Os.30611.1.S1_at1/113+33773568..33774433Dirigent-like protein, expressed
LOC_Os03g59450Os.17876.1.S1_at11/113+33776876..33780585transporter, putative, expressed
LOC_Os03g59460Os.54163.1.S1_at3/113+33781769..33784143bZIP transcription factor family protein
LOC_Os03g59470Os.9591.1.S1_at11/113+33784716..337887575-azacytidine resistance protein, putative, expressed
LOC_Os03g59470OsAffx.29946.2.S1_at1/113+33784716..337887575-azacytidine resistance protein, putative, expressed
LOC_Os03g59480OsAffx.25768.1.S1_at11/113+33789074..33793670expressed protein
LOC_Os03g59480OsAffx.25768.1.S1_x_at11/113+33789074..33793670expressed protein
LOC_Os03g59480Os.19198.1.S1_at11/113+33789074..33793670expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0007568biological_processaging
GO:0009416biological_processresponse to light stimulus
GO:0009744biological_processresponse to sucrose stimulus
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52136.1.S1_at--831--8751Chr03:33772410..33772479 (25 bp)
TGTACGCCCACAGATCAGGTGAGCT
LOC_Os03g59430
Os.52136.1.S1_at--697--3471Chr03:33772514..33772538 (25 bp)
CAGGTGAGCTGATCAGGTTGCCCAA
LOC_Os03g59430
Os.52136.1.S1_at--407--9631Chr03:33772526..33772550 (25 bp)
TCAGGTTGCCCAAGGGAGCGACGCT
LOC_Os03g59430
Os.52136.1.S1_at--913--2891Chr03:33772564..33772588 (25 bp)
AAGGTGCTGGAGTTCGAGCTGTTCC
LOC_Os03g59430
Os.52136.1.S1_at--1078--6051Chr03:33772573..33772597 (25 bp)
GAGTTCGAGCTGTTCCATGTCTGCC
LOC_Os03g59430
Os.52136.1.S1_at--32--6631Chr03:33772908..33772932 (25 bp)
GTTGTACAAATGGACCGTGGAGATC
LOC_Os03g59430
Os.52136.1.S1_at--217--7791Chr03:33772935..33772959 (25 bp)
GGTCTAGGAGGAGCCTGATTCCTGT
LOC_Os03g59430
Os.52136.1.S1_at--948--4471Chr03:33772947..33772971 (25 bp)
GCCTGATTCCTGTGATTCTGTGTGA
LOC_Os03g59430
Os.52136.1.S1_at--2--2411Chr03:33772982..33773006 (25 bp)
AAACATATAATGCTGTGCCCTCTGC
LOC_Os03g59430
Os.52136.1.S1_at--459--4191Chr03:33772999..33773023 (25 bp)
CCCTCTGCCTGAATAAACCCTATAT
LOC_Os03g59430
Os.52136.1.S1_at--806--2611Chr03:33773014..33773038 (25 bp)
AACCCTATATGTACCACTGAACAGT
LOC_Os03g59430
Target Sequence 
TGTACGCCCACAGATCAGGTGAGCTGATCAGGTTGCCCAAGGGAGCGACGCTGCCGGTGACGCTCAAGGTGCTGGAGTTC
GAGCTGTTCCATGTCTGCCCCGTCATGACGGTGGCGCCGGGCGGCGGCGGCGGCGGCGTTACGTTCGCGCCGATCGGCCT
GCTCGACATGTTCAACTCCGGCGGAGCGGTGGAGGAATGCGACGTCGTCCGTGCCCTCGACGCCGCAGGCGAGGCCGAGG
CCGAGGCCGAGGCCGCCGTCGTGCGCCTTAGGGCCCGTGGCTGCGGCCGGTTCGGCGCCTACTCCTCCCGGCGGCCGGCG
CGGTGCGCGCTGGACGCCGTGGAGGTGGAGTTCAGCTACGACGCCGACACGGGGCTCGTCGCGCTCGACGTCCCCGTGCC
GGCACATGAGTTGTACAAATGGACCGTGGAGATCCAGGTCTAGGAGGAGCCTGATTCCTGTGATTCTGTGTGAGAGGAAT
GGAAAACATATAATGCTGTGCCCTCTGCCTGAATAAACCCTATATGTACCACTGAACAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52136.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis