Browse Element(s) Details


Os.19198.1.S1_at

Description gb:BM420425
DB_XREF= gi:18387227
DB_XREF=U011E02
CLONE=U011E02
TID=Os.19198.1
CNT=3
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.19198 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_177651.1 (A.thaliana) hypothetical protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5948011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g59420NANA3+33763220..33766510retrotransposon protein, putative, unclassified
LOC_Os03g59430Os.52136.1.S1_at11/113+33768444..33773080Raffinose synthase or seed imbibition protein Sip1 containing protein, expressed
LOC_Os03g59440Os.4965.1.S1_at11/113+33773568..33774433Dirigent-like protein, expressed
LOC_Os03g59440Os.30611.1.S1_at1/113+33773568..33774433Dirigent-like protein, expressed
LOC_Os03g59450Os.17876.1.S1_at11/113+33776876..33780585transporter, putative, expressed
LOC_Os03g59460Os.54163.1.S1_at3/113+33781769..33784143bZIP transcription factor family protein
LOC_Os03g59470Os.9591.1.S1_at11/113+33784716..337887575-azacytidine resistance protein, putative, expressed
LOC_Os03g59470OsAffx.29946.2.S1_at1/113+33784716..337887575-azacytidine resistance protein, putative, expressed
LOC_Os03g59480OsAffx.25768.1.S1_at11/113+33789074..33793670expressed protein
LOC_Os03g59480OsAffx.25768.1.S1_x_at11/113+33789074..33793670expressed protein
LOC_Os03g59480Os.19198.1.S1_at11/113+33789074..33793670expressed protein
LOC_Os03g59500NANA3+33803951..33809773retrotransposon protein, putative, unclassified
LOC_Os03g59510Os.28943.1.S1_x_at4/113+33810533..33813668retrotransposon protein, putative, unclassified
LOC_Os03g59520Os.37083.2.S1_at2/113+33814605..33815990retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g59520OsAffx.20257.1.S1_at1/113+33814605..33815990retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0031225cellular_componentanchored to membrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19198.1.S1_at--60--5551Chr03:33789280..33789304 (25 bp)
GAAACTGATATGATCCCTCATCCTC
LOC_Os03g59480
Os.19198.1.S1_at--1150--3671Chr03:33789250..33789274 (25 bp)
CTTTCTCACCTGCTATTACCAGAAA
LOC_Os03g59480
Os.19198.1.S1_at--622--4871Chr03:33789239..33789263 (25 bp)
GCTATTACCAGAAAGTGAAATCCAT
LOC_Os03g59480
Os.19198.1.S1_at--1111--1111Chr03:33789226..33789250 (25 bp)
AGTGAAATCCATCACTGCGTTTTTT
LOC_Os03g59480
Os.19198.1.S1_at--741--7271Chr03:33789193..33789217 (25 bp)
GTGCCTTTCTTCTTAGAGTAACTGT
LOC_Os03g59480
Os.19198.1.S1_at--607--7051Chr03:33789176..33789200 (25 bp)
GTAACTGTTCTTGTTTGTGCTCTGT
LOC_Os03g59480
Os.19198.1.S1_at--554--8771Chr03:33789165..33789189 (25 bp)
TGTTTGTGCTCTGTAAAATTTGTAT
LOC_Os03g59480
Os.19198.1.S1_at--783--10391Chr03:33789134..33789158 (25 bp)
TTTTCCATATGGTCTTGACTTCGGA
LOC_Os03g59480
Os.19198.1.S1_at--92--271Chr03:33789128..33789152 (25 bp)
ATATGGTCTTGACTTCGGAGATAAC
LOC_Os03g59480
Os.19198.1.S1_at--199--5691Chr03:33789118..33789142 (25 bp)
GACTTCGGAGATAACGTTTACATTC
LOC_Os03g59480
Os.19198.1.S1_at--669--3991Chr03:33789104..33789128 (25 bp)
CGTTTACATTCTGTTTAAAGTGCAT
LOC_Os03g59480
Target Sequence 
GAAACTGATATGATCCCTCATCCTCGCTTCCTTTCTCACCTGCTATTACCAGAAAGTGAAATCCATCACTGCGTTTTTTT
TCCTTGAGTGCCTTTCTTCTTAGAGTAACTGTTCTTGTTTGTGCTCTGTAAAATTTGTATATCTGATTTTCCATATGGTC
TTGACTTCGGAGATAACGTTTACATTCTGTTTAAAGTGCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19198.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis