Browse Element(s) Details


Os.4965.1.S1_at

Description gb:AK121408.1
DB_XREF= gi:37991031
TID=Os.4965.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.4965 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023132M14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023132M14, full insert sequence.
FL= gb:AK121408.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5944011/11Dirigent-like protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g59390Os.5004.1.S1_at10/113+33744763..33749033Calcium-dependent protein kinase, isoform AK1, putative, expressed
LOC_Os03g59400OsAffx.13551.1.S1_at10/113+33750953..33751357hypothetical protein
LOC_Os03g59410NANA3+33756437..33762591retrotransposon protein, putative, unclassified
LOC_Os03g59420NANA3+33763220..33766510retrotransposon protein, putative, unclassified
LOC_Os03g59430Os.52136.1.S1_at11/113+33768444..33773080Raffinose synthase or seed imbibition protein Sip1 containing protein, expressed
LOC_Os03g59440Os.4965.1.S1_at11/113+33773568..33774433Dirigent-like protein, expressed
LOC_Os03g59440Os.30611.1.S1_at1/113+33773568..33774433Dirigent-like protein, expressed
LOC_Os03g59450Os.17876.1.S1_at11/113+33776876..33780585transporter, putative, expressed
LOC_Os03g59460Os.54163.1.S1_at3/113+33781769..33784143bZIP transcription factor family protein
LOC_Os03g59470Os.9591.1.S1_at11/113+33784716..337887575-azacytidine resistance protein, putative, expressed
LOC_Os03g59470OsAffx.29946.2.S1_at1/113+33784716..337887575-azacytidine resistance protein, putative, expressed
LOC_Os03g59480OsAffx.25768.1.S1_at11/113+33789074..33793670expressed protein
LOC_Os03g59480OsAffx.25768.1.S1_x_at11/113+33789074..33793670expressed protein
LOC_Os03g59480Os.19198.1.S1_at11/113+33789074..33793670expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009807biological_processlignan biosynthesis
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4965.1.S1_at--271--451Chr03:33774130..33774154 (25 bp)
ATCTATGTGGTCGATGATCTGCTGA
LOC_Os03g59440
Os.4965.1.S1_at--1100--7651Chr03:33774061..33774085 (25 bp)
GGGATGTACATTTCGACAGCCAAGA
LOC_Os03g59440
Os.4965.1.S1_at--727--4371Chr03:33774042..33774066 (25 bp)
CCAAGAAAGGGCTCACGCTTGTTCT
LOC_Os03g59440
Os.4965.1.S1_at--782--7971Chr03:33774015..33774039 (25 bp)
GGATCGATTTCGAGCTCACTGATGG
LOC_Os03g59440
Os.4965.1.S1_at--777--4791Chr03:33773976..33774000 (25 bp)
GCTCGTTCGTCGTGTACTCGCGGAA
LOC_Os03g59440
Os.4965.1.S1_at--510--6751Chr03:33773897..33773921 (25 bp)
GTTCAGGATGGCTCGAGGTTTCGCC
LOC_Os03g59440
Os.4965.1.S1_at--15--10311Chr03:33773879..33773903 (25 bp)
TTTCGCCTTGCTTCAGACTGTTTAT
LOC_Os03g59440
Os.4965.1.S1_at--828--6891Chr03:33773822..33773846 (25 bp)
GTATAATGTGACTCTCTTGCACCAT
LOC_Os03g59440
Os.4965.1.S1_at--503--6591Chr03:33773763..33773787 (25 bp)
GTTGTTTTAGTTATTATGCCCGTGC
LOC_Os03g59440
Os.4965.1.S1_at--337--4891Chr03:33773740..33773764 (25 bp)
GCTTTCCGTTGTTTGGAGCACAATA
LOC_Os03g59440
Os.4965.1.S1_at--199--6851Chr03:33773613..33773637 (25 bp)
GTTTGCCTGGTTGAATCTCCATTTT
LOC_Os03g59440
Target Sequence 
ATCTATGTGGTCGATGATCTGCTGACAGAGGGGCCTCAGAGAGAATCCAAGGTGGTTGGGAATGCGCAGGGGATGTACAT
TTCGACAGCCAAGAAAGGGCTCACGCTTGTTCTTNGGGATCGATTTCGAGCTCACTGATGGNCCCNTACAAAGGCAGCTC
GTTCGTCGTGTACTCGCGGAACCCGGTCATGCAGGGGAATGGCANGGGAGCTCGCCATTGTTGGTGGCCGTGGTTTGTTC
AGGATGGCTCGAGGTTTCGCCTTGCTTCAGACTGTTTATCTGGACAACGTGAACGGCGATGCGATCATAGAGTATAATGT
GACTCTCTTGCACCATTGAGTTGTTTTTTTTTTTTTGGAATAAGAGTTGAGTTGTTTTAGTTATTATGCCCGTGCTTTCC
GTTGTTTGGAGCACAATAAGTGTGATCTGTGGTTGGGTTTGTCAGGTTATGTTTTCCATTTCTTTTCTTTTGTTTGTCNA
CTCTCCAGGNGATGGATATGTCATGGAAATTCGTANAAATGTTTGCCTGGTTGAATCTCCATTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4965.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis