Browse Element(s) Details


Os.50043.1.A1_x_at

Description gb:AK119753.1
DB_XREF= gi:37989376
TID=Os.50043.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50043 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-167-E02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-167-E02, full insert sequence.
FL= gb:AK119753.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2759011/11Serine carboxypeptidase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g27540NANA3+15776756..15779725transposon protein, putative, Pong sub-class, expressed
LOC_Os03g27550NANA3+15780048..15780673serine carboxypeptidase S10 family protein, putative
LOC_Os03g27560OsAffx.10931.3.S1_at11/113+15785028..15785884hypothetical protein
LOC_Os03g27570OsAffx.13079.1.S1_at9/113+15789001..15789291hypothetical protein
LOC_Os03g27580OsAffx.13079.1.S1_at11/113+15790978..15791835hypothetical protein
LOC_Os03g27590Os.50043.1.A1_at11/113+15802425..15807865Serine carboxypeptidase family protein, expressed
LOC_Os03g27590Os.50043.1.A1_x_at11/113+15802425..15807865Serine carboxypeptidase family protein, expressed
LOC_Os03g27590Os.26833.1.S1_x_at10/113+15802425..15807865Serine carboxypeptidase family protein, expressed
LOC_Os03g27590Os.26833.1.S1_at10/113+15802425..15807865Serine carboxypeptidase family protein, expressed
LOC_Os03g27590Os.26833.2.S1_at3/113+15802425..15807865Serine carboxypeptidase family protein, expressed
LOC_Os03g27610Os.7429.1.S1_at11/113+15815375..15817181Patatin-like phospholipase family protein, expressed
LOC_Os03g27610OsAffx.32056.4.S1_x_at1/113+15815375..15817181Patatin-like phospholipase family protein, expressed
LOC_Os03g27610OsAffx.32056.3.S1_x_at1/113+15815375..15817181Patatin-like phospholipase family protein, expressed
LOC_Os03g27630OsAffx.3347.1.S1_at10/113+15820661..15821849hypothetical protein
LOC_Os03g27640NANA3+15824387..15826313retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g27650NANA3+15826801..15827559retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0004185molecular_functionserine carboxypeptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50043.1.A1_x_at--346--2432Chr03:22895814..22896087 (25 bp)
AAAACGCATGCCACTACTAGAAAAA
NONE
Os.50043.1.A1_x_at--849--9431Chr03:15803397..15803421 (25 bp)
TCTAAGGCCGTGTTTAAATTCAAAT
LOC_Os03g27590
Os.50043.1.A1_x_at--559--331Chr03:15803123..15803147 (25 bp)
ATACTTCAAATATTATGTGCCCATA
LOC_Os03g27590
Os.50043.1.A1_x_at--335--3371Chr03:15803064..15803088 (25 bp)
CAGCCTAACCTGAATTGTACGTTTA
LOC_Os03g27590
Os.50043.1.A1_x_at--358--3511Chr03:15803039..15803063 (25 bp)
CATGTGTTATGTTCTCTGCAGGTAC
LOC_Os03g27590
Os.50043.1.A1_x_at--722--10571Chr03:15803028..15803052 (25 bp)
TTCTCTGCAGGTACCTGCTGATCAG
LOC_Os03g27590
Os.50043.1.A1_x_at--254--1671Chr03:15803005..15803029 (25 bp)
AGCCCTGCATTGCACTGAGCATGAT
LOC_Os03g27590
Os.50043.1.A1_x_at--1160--8831Chr03:15802984..15803008 (25 bp)
TGATCAGTAGCATAACCCAGTCTCC
LOC_Os03g27590
Os.50043.1.A1_x_at--618--2611Chr03:15802971..15802995 (25 bp)
AACCCAGTCTCCAGCCAGTTAGATA
LOC_Os03g27590
Os.50043.1.A1_x_at--274--4411Chr03:15802958..15802982 (25 bp)
GCCAGTTAGATATCTCCCATCAGTA
LOC_Os03g27590
Os.50043.1.A1_x_at--433--6511Chr03:15802892..15802916 (25 bp)
GATATACCTCACTCTCAATTAGCAG
LOC_Os03g27590
Target Sequence 
AAAACGCATGCCACTACTAGAAAAACTCTAGTTACAAGTTTGATTTCTAAGGCCGTGTTTAAATTCAAATTTTTTTCGTC
AAACTTCCAACTTTTCCGTCACAACAAATATTTAGATATATGCATGGAGCATTAAATGTGGATGAAAAAAATCAATTGGA
CAGTTTGTATGTAAATTGCAAGACGAATCTTTTGAGCCTAATTACGCATTGATTTGACAATGTGAACATTTGCTAATGAC
GGATTAACTAGGCTTAATAAATTCGTCTCGCAATTTACATGCGGAATCTGTAATTTGTTTTGTTATTAGTCTACGTTTAA
TACTTCAAATATTATGTGCCCATATACTTAAAAAAAAATTTTGGCACACGAATTAAACACAGCCTAACCTGAATTGTACG
TTTACATGTGTTATGTTCTCTGCAGGTACCTGCTGATCAGCCCTGCATTGCACTGAGCATGATCAGTAGCATAACCCAGT
CTCCAGCCAGTTAGATATCTCCCATCAGTAACAGATATACTCAAGAAAAGATAGAAAACAGAAGGCAAACAGATATACCT
CACTCTCAATTAGCAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50043.1.A1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis