Browse Element(s) Details


Os.50046.1.S1_at

Description gb:AK119762.1
DB_XREF= gi:37989385
TID=Os.50046.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50046 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-171-G08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-171-G08, full insert sequence.
FL= gb:AK119762.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g4183011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g41820Os.27324.1.S1_a_at11/1111+24647368..24652097U2 snRNP auxilliary factor, large subunit, splicing factor family protein, expressed
LOC_Os11g41830Os.50046.1.S1_at11/1111+24652445..24654168expressed protein
LOC_Os11g41830OsAffx.19315.1.S1_x_at1/1111+24652445..24654168expressed protein
LOC_Os11g41840OsAffx.19315.1.S1_x_at1/1111+24658671..24660289Sugar transporter family protein
LOC_Os11g41840Os.54779.1.S1_s_at1/1111+24658671..24660289Sugar transporter family protein
LOC_Os11g41850Os.54779.1.S1_s_at11/1111+24664429..24666390Sugar transporter family protein, expressed
LOC_Os11g41860Os.16002.1.S1_at11/1111+24670365..24672205F-box domain containing protein, expressed
LOC_Os11g41860OsAffx.19314.1.S1_s_at11/1111+24670365..24672205F-box domain containing protein, expressed
LOC_Os11g41870Os.22949.1.S1_at11/1111+24673662..24678827Sugar transporter family protein, expressed
LOC_Os11g41870OsAffx.19315.1.S1_x_at11/1111+24673662..24678827Sugar transporter family protein, expressed
LOC_Os11g41870Os.11062.1.S1_at9/1111+24673662..24678827Sugar transporter family protein, expressed
LOC_Os11g41870Os.11829.1.S1_at3/1111+24673662..24678827Sugar transporter family protein, expressed
LOC_Os11g41870Os.54779.1.S1_s_at1/1111+24673662..24678827Sugar transporter family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50046.1.S1_at--319--4011Chr11:24652801..24652825 (25 bp)
CGTACACCGCGGAGGTGTTGCCGCT
LOC_Os11g41830
Os.50046.1.S1_at--404--5811Chr11:24652574..24652598 (25 bp)
GACGCGCTGTTCCACAAGTGATCGT
LOC_Os11g41830
Os.50046.1.S1_at--34--6691Chr11:24652566..24652590 (25 bp)
GTTCCACAAGTGATCGTGTCGGACG
LOC_Os11g41830
Os.50046.1.S1_at--147--511Chr11:24652554..24652578 (25 bp)
ATCGTGTCGGACGACTCGTTGTGAA
LOC_Os11g41830
Os.50046.1.S1_at--410--8111Chr11:24652546..24652570 (25 bp)
GGACGACTCGTTGTGAACACCATTT
LOC_Os11g41830
Os.50046.1.S1_at--70--5511Chr11:24652532..24652556 (25 bp)
GAACACCATTTGATCTCGGTTTGAA
LOC_Os11g41830
Os.50046.1.S1_at--828--6411Chr11:24652521..24652545 (25 bp)
GATCTCGGTTTGAAATCTCGTTCGA
LOC_Os11g41830
Os.50046.1.S1_at--685--5571Chr11:24652510..24652534 (25 bp)
GAAATCTCGTTCGAATATTTAACAT
LOC_Os11g41830
Os.50046.1.S1_at--488--211Chr11:24652496..24652520 (25 bp)
ATATTTAACATCAATTCGTTTGGAA
LOC_Os11g41830
Os.50046.1.S1_at--822--5531Chr11:24652474..24652498 (25 bp)
GAAACAACAACACTCGCATGACCGA
LOC_Os11g41830
Os.50046.1.S1_at--584--1991Chr11:24652463..24652487 (25 bp)
ACTCGCATGACCGATTTGAACATAA
LOC_Os11g41830
Target Sequence 
CGTACACCGCGGAGGTGTTGCCGCTGCGGCTGCGCGCGCAGGGCGCGAGCCTCGGCATCGTCGTGAACCGGCTGACGTGC
GGCGTGATGAGCATGACGTTCATCTCGGTCGCCGGCGGGATCACCATGGTCGGGTTCTTCTTCCTCTACGCCGGCGTGGC
GGCGGCGGCGTGCGTGTTCGTGCACGCGCGGCTGCCGGAGACGCGAGGGCGAAGCTTGGAGGACATGGACGCGCTGTTCC
ACAAGTGATCGTGTCGGACGACTCGTTGTGAACACCATTTGATCTCGGTTTGAAATCTCGTTCGAATATTTAACATCAAT
TCGTTTGGAAACAACAACACTCGCATGACCGATTTGAACATAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50046.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis