Browse Element(s) Details


Os.50119.1.S1_at

Description gb:AK121678.1
DB_XREF= gi:37991301
TID=Os.50119.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50119 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033069H05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033069H05, full insert sequence.
FL= gb:AK121678.1 gb:AK119890.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3641411/11Sugar transporter family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g36380Os.4180.1.S1_at10/112+21970640..21974426Cryptochrome 1 apoprotein, putative, expressed
LOC_Os02g36390Os.23556.1.S1_at11/112+21974196..21980638nucleotide-sugar transporter family protein, putative, expressed
LOC_Os02g36400OsAffx.24597.1.S1_at11/112+21981288..21985477Ubiquitin carboxyl-terminal hydrolase 4, putative, expressed
LOC_Os02g36414Os.50119.1.S1_at11/112+21989655..21996650Sugar transporter family protein, expressed
LOC_Os02g36430OsAffx.24598.1.S1_at11/112+21999875..22000123hypothetical protein
LOC_Os02g36440Os.53709.1.S1_at11/112+22001604..22006231Sugar transporter family protein, expressed
LOC_Os02g36450Os.27080.1.S1_at11/112+22007420..22011776Sugar transporter family protein, expressed
LOC_Os02g36460OsAffx.12373.1.S1_at11/112+22014757..22015109hypothetical protein
LOC_Os02g36470NANA2+22020210..22025828retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0015770biological_processsucrose transport
GO:0005887cellular_componentintegral to plasma membrane
GO:0016020cellular_componentmembrane
GO:0005351molecular_functionsugar porter activity
GO:0008506molecular_functionsucrose:hydrogen symporter activity
GO:0015144molecular_functioncarbohydrate transporter activity
GO:0015145molecular_functionmonosaccharide transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50119.1.S1_at--966--1411Chr02:21996120..21996144 (25 bp)
AGACACAGTCGTTCCTCCGGATGCT
LOC_Os02g36414
Os.50119.1.S1_at--19--7571Chr02:21996381..21996405 (25 bp)
GGGCTGGGCATTGACACGTACGTAC
LOC_Os02g36414
Os.50119.1.S1_at--884--6991Chr02:21996398..21996422 (25 bp)
GTACGTACGTTGTGTTAGCTAATGC
LOC_Os02g36414
Os.50119.1.S1_at--1124--4831Chr02:21996415..21996439 (25 bp)
GCTAATGCTGATGGGCTCGTGATGT
LOC_Os02g36414
Os.50119.1.S1_at--1113--751Chr02:21996436..21996460 (25 bp)
ATGTCGGGCACTGCATGCATGGTGC
LOC_Os02g36414
Os.50119.1.S1_at--125--7491Chr02:21996472..21996496 (25 bp)
GTGTGGACTCGATATCCATCGGCAT
LOC_Os02g36414
Os.50119.1.S1_at--515--3231Chr02:21996516..21996540 (25 bp)
CACACGGGCAACTGGGCAAACCGGG
LOC_Os02g36414
Os.50119.1.S1_at--595--2851Chr02:21996564..21996588 (25 bp)
AAGTCGACTAGTTCTGTCTTGTGTA
LOC_Os02g36414
Os.50119.1.S1_at--794--5631Chr02:21996594..21996618 (25 bp)
GACACGGTAGAGTCTGACCATCAAA
LOC_Os02g36414
Os.50119.1.S1_at--1118--5831Chr02:21996609..21996633 (25 bp)
GACCATCAAACGTTACTTATCACAT
LOC_Os02g36414
Os.50119.1.S1_at--707--10151Chr02:21996626..21996650 (25 bp)
TATCACATATACAGTACTCCGCAGT
LOC_Os02g36414
Target Sequence 
AGACACAGTCGTTCCTCCGGATGCTGTGCAGCTTCAAGTTCGGNGCCTTCGCGTACAACGCCGCGTGGGTGGTGGTCATG
ACGGCGTTCGTGGCGCTCCTCCTGCCGGAGACCAAGGGGGTGCCCATCGAGTCGCTCGGCGCGGTGTGGGCGCAGCACTG
GTACTGGAAGCGCTTCGTCAAGCCGCCGCCGCCGCCGCCATNGACGGCGGCGGAGACCAAGCAGGCGGACGGGGCTCCGG
CATGAGAGACGTGGTGGTGGGGGGCTGGGCATTGACACGTACGTACGTTGTGTTAGCTAATGCTGATGGGCTCGTGATGT
CGGGCACTGCATGCATGGTGCGGTGGTGTGGAGTGTGGACTCGATATCCATCGGCATCGCCGTTGTTGGGGTTAGCCACA
CGGGCAACTGGGCAAACCGGGGCGATGGACATGGATGATCGAACAAGTCGACTAGTTCTGTCTTGTGTANCGCAGACACG
GTAGAGTCTGACCATCAAACGTTACTTATCACATATACAGTACTCCGCAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50119.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis