Browse Element(s) Details


Os.50125.1.S1_at

Description gb:AK119913.1
DB_XREF= gi:37989536
TID=Os.50125.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50125 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-183-F01, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-183-F01, full insert sequence.
FL= gb:AK119913.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5786011/11Glycosyl hydrolase family 9 protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g57810Os.5112.1.S1_at11/114+34204464..34207169expressed protein
LOC_Os04g57819NANA4+34208924..34209115NA
LOC_Os04g57830Os.50377.1.S1_at9/114+34217596..34219647expressed protein
LOC_Os04g57840Os.52864.1.S1_at11/114+34221269..34225011transposon protein, putative, unclassified, expressed
LOC_Os04g57850Os.54727.1.S1_s_at11/114+34225770..34227752AMP-binding enzyme family protein, expressed
LOC_Os04g57850Os.19444.1.S1_at4/114+34225770..34227752AMP-binding enzyme family protein, expressed
LOC_Os04g57860Os.50125.1.S1_at11/114+34231500..34235279Glycosyl hydrolase family 9 protein, expressed
LOC_Os04g57870Os.56969.1.S1_at11/114+34238005..34244668expressed protein
LOC_Os04g57870Os.51820.1.S1_at11/114+34238005..34244668expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0004553molecular_functionhydrolase activity, hydrolyzing O-glycosyl compounds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50125.1.S1_at--61--931Chr04:34232037..34232061 (25 bp)
AGGCAAACGGCGTGGACTACTACCG
LOC_Os04g57860
Os.50125.1.S1_at--515--2911Chr04:34231906..34231930 (25 bp)
AAGGACATGTACGAGTTCCCGTCGT
LOC_Os04g57860
Os.50125.1.S1_at--238--1831Chr04:34231767..34231791 (25 bp)
ACGACTGATTTCTGCCTTTCCTTTT
LOC_Os04g57860
Os.50125.1.S1_at--191--10871Chr04:34231718..34231742 (25 bp)
TTGGCTGCTGCTTTTCAGCAAACAG
LOC_Os04g57860
Os.50125.1.S1_at--51--2491Chr04:34231698..34231722 (25 bp)
AACAGGTGGTGTGCAATCTCGAAGC
LOC_Os04g57860
Os.50125.1.S1_at--337--2591Chr04:34231673..34231697 (25 bp)
AACGAGTCTGTGATGTCACCTCTGA
LOC_Os04g57860
Os.50125.1.S1_at--755--9471Chr04:34231653..34231677 (25 bp)
TCTGACCACGACTGCTTTGAGATGT
LOC_Os04g57860
Os.50125.1.S1_at--724--651Chr04:34231624..34231648 (25 bp)
ATGCACTGTTTCTTCTGTACTTGGA
LOC_Os04g57860
Os.50125.1.S1_at--70--8051Chr04:34231591..34231615 (25 bp)
GGAGATCTCTCAGCTTTTCTTTTAG
LOC_Os04g57860
Os.50125.1.S1_at--805--10451Chr04:34231570..34231594 (25 bp)
TTAGCTTTCGTGATTTCTCCATTCT
LOC_Os04g57860
Os.50125.1.S1_at--983--3351Chr04:34231535..34231559 (25 bp)
CACGCCTGTGTGTTTTATATGTTCA
LOC_Os04g57860
Target Sequence 
AGGCAAACGGCGTGGACTACTACCGGCACGTGGTGACGGCGAAGAACACGTGCGGCCACGCCATCACCTACCTGAAGCTG
CAGATCAAGGAGCTCTCCGGGGAGATCTACGGCGTCTCCCGCACGAACGCCAAGGACATGTACGAGTTCCCGTCGTGGAT
GACACGGCTCGACGCCGGCGCGCAGCTCACCATCGTCTACATCCAGGGCGGCCCCGCCGCCAAGATCGCCGTCGTCGAGT
ACAAGACGGCCTGAGAATGGCACGACGACGACGACTGATTTCTGCCTTTCCTTTTTTCCATTTTAGTTTTGGTGTGTGGT
TGGCTGCTGCTTTTCAGCAAACAGGTGGTGTGCAATCTCGAAGCAACGAGTCTGTGATGTCACCTCTGACCACGACTGCT
TTGAGATGTGGACATGCACTGTTTCTTCTGTACTTGGAATGGCATAGGAGATCTCTCAGCTTTTCTTTTAGCTTTCGTGA
TTTCTCCATTCTTTCCGCTGTGCACGCCTGTGTGTTTTATATGTTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50125.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis