Browse Element(s) Details


Os.50127.1.S1_at

Description gb:AK119916.1
DB_XREF= gi:37989539
TID=Os.50127.1
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50127 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-183-F10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-183-F10, full insert sequence.
FL= gb:AK119916.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g300304/11Protein kinase domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g29990OsAffx.3947.1.S1_at11/114+17700755..17704183Calcium binding EGF domain containing protein
LOC_Os04g30000OsAffx.26244.1.S1_at10/114+17716533..17717106hypothetical protein
LOC_Os04g30010Os.19575.1.A1_at11/114+17718708..17722411Calcium binding EGF domain containing protein, expressed
LOC_Os04g30010Os.19575.2.S1_at10/114+17718708..17722411Calcium binding EGF domain containing protein, expressed
LOC_Os04g30020OsAffx.14038.1.S1_at11/114+17725145..17725522hypothetical protein
LOC_Os04g30030Os.50127.1.S1_at4/114+17726046..17729387Protein kinase domain containing protein
LOC_Os04g30040OsAffx.14039.1.S1_s_at11/114+17742051..17753089Jacalin-like lectin domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0004672molecular_functionprotein kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50127.1.S1_at--913--8551Chr04:17726389..17726413 (25 bp)
TGGAGGTGCGCTTCCCATTTGAGAA
LOC_Os04g30030
Os.50127.1.S1_at--617--2131Chr04:17726362..17726386 (25 bp)
ACAGGGATGTATCCTGCGTGCTGCA
LOC_Os04g30030
Os.50127.1.S1_at--1071--5772Chr04:17726129..17726153 (25 bp)
GACGACTTTGCGGAAGACTTCGAAA
LOC_Os04g30030
Os.50127.1.S1_at--253--6211Chr04:17726070..17726094 (25 bp)
GAGGCTGCCGGTTGTCTATATCGCA
LOC_Os04g30030
Os.50127.1.S1_at--404--3751Chr04:17726041..17726065 (25 bp)
CTCTACCTCCTAGCAGTTAAGCGAT
NONE
Os.50127.1.S1_at--921--1611Chr04:17726008..17726032 (25 bp)
AGCTGTCTGTCCTCATGTATCAGAG
NONE
Os.50127.1.S1_at--94--6031Chr04:17725986..17726010 (25 bp)
GAGATCCGCTAGCTAGTCCGAATAA
NONE
Os.50127.1.S1_at--642--7251Chr04:17725971..17725995 (25 bp)
GTCCGAATAATGTCCGATCCGTCGA
NONE
Os.50127.1.S1_at--1020--6371Chr04:17725956..17725980 (25 bp)
GATCCGTCGACATTTGCGTCTTAAC
NONE
Os.50127.1.S1_at--204--9151Chr04:17725942..17725966 (25 bp)
TGCGTCTTAACAGCCTCGTGATTTA
NONE
Os.50127.1.S1_at--710--8191Chr04:17725894..17725918 (25 bp)
GGAAGATAGCCCACGCATATGTGCG
NONE
Target Sequence 
TGGAGGTGCGCTTCCCATTTGAGAAGGACAGGGATGTATCCTGCGTGCTGCAGCTGACGAACAGGTCCGCCGATCGCGTG
GCGTTCGCCGTGCAGGTGGACGAGTCCAAGTACCGCGCGGTGCCGGACAGGGGCGTCGTGCAGCCGCGGTCCAGGCGGTA
CATCGTCGCGACGTCGCGAGCGCAGGCGAGCGCGCCGACCAACTTGCAGCGCGACGACTCGTTCCTCCTGCGGAGCAAGA
GGGTGGAGGGCAGCGCCGACGACGACTTTGCGGAAGACTTCGAAAAGCTGATGGGCAAGGCGGTGGATGGGGAGACGATG
AGGCTGCCGGTTGTCTATATCGCACTGCCTCTACCTCCTAGCAGTTAAGCGATTNATACGCAGCTGTCTGTCCTCATGTA
TCAGAGATCCGCTAGCTAGTCCGAATAATGTCCGATCCGTCGACATTTGCGTCTTAACAGCCTCGTGATTTATATATATG
ACTTTTGTGAAACTAGGAAGATAGCCCACGCATATGTGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50127.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis