Browse Element(s) Details


Os.50139.1.S1_at

Description gb:AK119936.1
DB_XREF= gi:37989559
TID=Os.50139.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50139 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-184-A12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-184-A12, full insert sequence.
FL= gb:AK119936.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0828011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g08200OsAffx.17602.1.S1_at11/119+4252328..4254929hypothetical protein
LOC_Os09g08210OsAffx.17603.1.S1_at11/119+4256077..4257021hypothetical protein
LOC_Os09g08224OsAffx.22722.1.S1_x_at1/119+4260796..4266702retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g08240OsAffx.1647.1.S1_at1/119+4267223..4270181retrotransposon protein, putative, unclassified
LOC_Os09g08240OsAffx.20565.1.S1_at1/119+4267223..4270181retrotransposon protein, putative, unclassified
LOC_Os09g08254OsAffx.29760.1.S1_at11/119+4272509..4274876hypothetical protein
LOC_Os09g08254OsAffx.6202.1.S1_at11/119+4272509..4274876hypothetical protein
LOC_Os09g08270OsAffx.6203.1.S1_at11/119+4275123..4275419nodulin MtN3 protein, putative
LOC_Os09g08270OsAffx.6203.1.S1_x_at11/119+4275123..4275419nodulin MtN3 protein, putative
LOC_Os09g08270OsAffx.29764.1.S1_x_at1/119+4275123..4275419nodulin MtN3 protein, putative
LOC_Os09g08280Os.50139.1.S1_at11/119+4276193..4276778expressed protein
LOC_Os09g08290OsAffx.6204.1.S1_at11/119+4285895..4287615hypothetical protein
LOC_Os09g08300OsAffx.17604.1.S1_at11/119+4289126..4290626expressed protein
LOC_Os09g08310OsAffx.19542.3.S1_x_at4/119+4292946..4296916retrotransposon protein, putative, Ty1-copia subclass
LOC_Os09g08320OsAffx.29761.1.S1_at11/119+4298707..4299135NA
LOC_Os09g08320Os.7.1.S1_a_at1/119+4298707..4299135NA
LOC_Os09g08320Os.7.1.S1_x_at1/119+4298707..4299135NA

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50139.1.S1_at--349--2371Chr09:4276716..4276740 (25 bp)
AAACCAATGGCAACTCACCAGCAGA
LOC_Os09g08280
Os.50139.1.S1_at--872--9391Chr09:4276577..4276601 (25 bp)
TCGTCACCGTCGTGAACGGCGAGGA
LOC_Os09g08280
Os.50139.1.S1_at--85--5791Chr09:4276548..4276572 (25 bp)
GACGACGACAGTGGGTCCACGGACA
LOC_Os09g08280
Os.50139.1.S1_at--1119--5851Chr09:4276437..4276461 (25 bp)
GAGCCCGACGAGTGAATTACCGAGA
LOC_Os09g08280
Os.50139.1.S1_at--961--5311Chr09:4276414..4276438 (25 bp)
GAAGGTGTTTTCACGTGTGCCTTTG
LOC_Os09g08280
Os.50139.1.S1_at--1065--8691Chr09:4276399..4276423 (25 bp)
TGTGCCTTTGCTACGAGTTTTGTTT
LOC_Os09g08280
Os.50139.1.S1_at--994--6291Chr09:4276359..4276383 (25 bp)
GATGAGGGTGCACGAACTTATGATT
LOC_Os09g08280
Os.50139.1.S1_at--188--171Chr09:4276328..4276352 (25 bp)
ATTTTGGTTGTCTTAATTGTCGTAG
LOC_Os09g08280
Os.50139.1.S1_at--207--4031Chr09:4276308..4276332 (25 bp)
CGTAGTATTTTGTTGCAAGCTAGCA
LOC_Os09g08280
Os.50139.1.S1_at--158--10471Chr09:4276243..4276267 (25 bp)
TTACCTCATGTTCCAATGTTGTGTG
LOC_Os09g08280
Os.50139.1.S1_at--831--3271Chr09:4276196..4276220 (25 bp)
CAAAAATGTTGTGTGCTTAGCTAAG
LOC_Os09g08280
Target Sequence 
AAACCAATGGCAACTCACCAGCAGAAGATGCAGATGCCGCCGTCGTCCAAGGACGACGAGCCGGCGGCGGCAACACGCCC
GCCACCGCCGAAGCGGGAGGAGCGCGCCGAGAAGGCGCCGGAGATGGAGAAGAAGGTGGTCGTCACCGTCGTGAACGGCG
AGGAGGAGGACGACGACAGTGGGTCCACGGACAACGGGCGCCGCCGCTGCGTCTGCTCCGCCGCCGGCCAGCCGGCCGGG
CACTTCCGGTGNGTGTGCGCGGAGACGGACGGTGCCGACGAGCCCGACGAGTGAATTACCGAGAAGGTGTTTTCACGTGT
GCCTTTGCTACGAGTTTTGTTTTGATTGATGTATGGAGATGAGGGTGCACGAACTTATGATTGTTTTAATTTTGGTTGTC
TTAATTGTCGTAGTATTTTGTTGCAAGCTAGCAATAATCATAAATGGGCAAAAGAAGAGTATCTCTTTTTTTTTTACCTC
ATGTTCCAATGTTGTGTGTTGTTGTTTCAAATAAAGATTACAAAAATGTTGTGTGCTTAGCTAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50139.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis