Browse Element(s) Details


Os.50164.1.S1_at

Description gb:AK119974.1
DB_XREF= gi:37989597
TID=Os.50164.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50164 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-184-E11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-184-E11, full insert sequence.
FL= gb:AK119974.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5358011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g53540NANA2+32751206..32754497retrotransposon protein, putative, unclassified
LOC_Os02g53550NANA2+32755126..32761261retrotransposon protein, putative, unclassified
LOC_Os02g53559NANA2+32764474..32764597NA
LOC_Os02g53570OsAffx.3057.1.S1_at10/112+32770892..32771244hypothetical protein
LOC_Os02g53580Os.50164.1.S1_at11/112+32772316..32772895expressed protein
LOC_Os02g53590OsAffx.24853.1.S1_at11/112+32773930..32774555S locus-related glycoprotein 1 binding pollen coat protein containing protein, expressed
LOC_Os02g53600OsAffx.24854.1.S1_at11/112+32777375..32777745hypothetical protein
LOC_Os02g53610OsAffx.30226.2.S1_s_at10/112+32784480..32787428retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g53610OsAffx.30226.2.S1_x_at4/112+32784480..32787428retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g53610OsAffx.442.1.S1_x_at4/112+32784480..32787428retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g53610OsAffx.24587.1.S1_x_at3/112+32784480..32787428retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g53620OsAffx.12626.1.S1_at7/112+32788582..32794998CCAAT-binding transcription factor subunit B family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50164.1.S1_at--861--3931Chr02:32772743..32772767 (25 bp)
CGGCGTGCGCGAACAAGCGACTCAA
LOC_Os02g53580
Os.50164.1.S1_at--266--10111Chr02:32772645..32772669 (25 bp)
TATGGCGACAGGATGCCCCTCGTGC
LOC_Os02g53580
Os.50164.1.S1_at--325--1651Chr02:32772617..32772641 (25 bp)
AGCCCTTTTTGCGAGTCAGGCAGAT
LOC_Os02g53580
Os.50164.1.S1_at--722--1231Chr02:32772596..32772620 (25 bp)
AGATTACCGAGATGCCGGACCGATA
LOC_Os02g53580
Os.50164.1.S1_at--223--6391Chr02:32772561..32772585 (25 bp)
GATCGCTTCACCGATGAGCAGCTCG
LOC_Os02g53580
Os.50164.1.S1_at--485--5871Chr02:32772523..32772547 (25 bp)
GAGCCTCCACGCAACTTTGGTGAGA
LOC_Os02g53580
Os.50164.1.S1_at--526--7671Chr02:32772473..32772497 (25 bp)
GGGTTGAATCTGAGCTCAGGCGCAT
LOC_Os02g53580
Os.50164.1.S1_at--1044--2331Chr02:32772403..32772427 (25 bp)
AAAGCAGAGATCAAGCAGTAGCATG
LOC_Os02g53580
Os.50164.1.S1_at--879--5211Chr02:32772378..32772402 (25 bp)
GAATTAATCCATTTGTGATCCTCGT
LOC_Os02g53580
Os.50164.1.S1_at--768--10831Chr02:32772366..32772390 (25 bp)
TTGTGATCCTCGTATTGCGGTATCT
LOC_Os02g53580
Os.50164.1.S1_at--318--10711Chr02:32772352..32772376 (25 bp)
TTGCGGTATCTTGCTCTGCAGTATA
LOC_Os02g53580
Target Sequence 
CGGCGTGCGCGAACAAGCGACTCAAGGTGGAGGCCACAGTGACGAGCGACGGCGCCGTGGTGCGCCAGCGCCATGAGGCC
GCTGTGGCGGCGAGGGGCTATGGCGACAGGATGCCCCTCGTGCCGCAGCCCTTTTTGCGAGTCAGGCAGATTACCGAGAT
GCCGGACCGATACCGGTTCCTCGATCGCTTCACCGATGAGCAGCTCGCCACCATGCCCGAGAGCCTCCACGCAACTTTGG
TGAGAATTGAGGGGGGCTTCAAGAAGAGTTGGGTTGAATCTGAGCTCAGGCGCATGGAGATGTACAAAAACGTAATTTGA
GATTTGAGATCGTAGGTGGCAAAGCAGAGATCAAGCAGTAGCATGGAATTAATCCATTTGTGATCCTCGTATTGCGGTAT
CTTGCTCTGCAGTATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50164.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis