Browse Element(s) Details


OsAffx.12626.1.S1_at

Description tigr:9630.m05303
TID=OsAffx.12626.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=probable transcription factor - rice
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g536207/11CCAAT-binding transcription factor subunit B family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g53559NANA2+32764474..32764597NA
LOC_Os02g53570OsAffx.3057.1.S1_at10/112+32770892..32771244hypothetical protein
LOC_Os02g53580Os.50164.1.S1_at11/112+32772316..32772895expressed protein
LOC_Os02g53590OsAffx.24853.1.S1_at11/112+32773930..32774555S locus-related glycoprotein 1 binding pollen coat protein containing protein, expressed
LOC_Os02g53600OsAffx.24854.1.S1_at11/112+32777375..32777745hypothetical protein
LOC_Os02g53610OsAffx.30226.2.S1_s_at10/112+32784480..32787428retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g53610OsAffx.30226.2.S1_x_at4/112+32784480..32787428retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g53610OsAffx.442.1.S1_x_at4/112+32784480..32787428retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g53610OsAffx.24587.1.S1_x_at3/112+32784480..32787428retrotransposon protein, putative, Ty1-copia subclass
LOC_Os02g53620OsAffx.12626.1.S1_at7/112+32788582..32794998CCAAT-binding transcription factor subunit B family protein, expressed
LOC_Os02g53630Os.31312.2.S1_x_at4/112+32798674..32801858retrotransposon protein, putative, unclassified
LOC_Os02g53630Os.31312.5.S1_x_at3/112+32798674..32801858retrotransposon protein, putative, unclassified
LOC_Os02g53640OsAffx.9045.1.S1_at3/112+32802497..32804327retrotransposon protein, putative, unclassified
LOC_Os02g53640OsAffx.9045.1.S1_x_at3/112+32802497..32804327retrotransposon protein, putative, unclassified
LOC_Os02g53650OsAffx.22848.4.S1_at2/112+32806312..32812223retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g53650OsAffx.22848.4.S1_x_at1/112+32806312..32812223retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g53650OsAffx.22848.3.S1_x_at1/112+32806312..32812223retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g53660OsAffx.12627.1.S1_at11/112+32816969..32817880expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0016602cellular_componentCCAAT-binding factor complex
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12626.1.S1_at--93--5111Chr02:32788928..32788952 (25 bp)
GCACTGGTGGGCGATTCCTGAATAC
LOC_Os02g53620
OsAffx.12626.1.S1_at--49--3151Chr02:32788839..32788863 (25 bp)
AATTCTTCAGGTTCAGTCCATCTAC
LOC_Os02g53620
OsAffx.12626.1.S1_at--512--6031Chr02:32788793..32788817 (25 bp)
GAGATCAAACTCCATTTCCGTTCAA
LOC_Os02g53620
OsAffx.12626.1.S1_at--206--2791Chr02:32788743..32788767 (25 bp)
AAGAGAGCTGCAGCTTCTGCTTCCA
LOC_Os02g53620
OsAffx.12626.1.S1_at--796--10511Chr02:32788716..32788740 (25 bp)
TTCACTGTAACTTCTGCGGCACAGA
LOC_Os02g53620
OsAffx.12626.1.S1_at--391--10411Chr02:32788636..32788660 (25 bp)
TTTTGGCCAGGCAAGCGCACAAGGT
LOC_Os02g53620
OsAffx.12626.1.S1_at--571--9811Chr02:32788594..32788618 (25 bp)
TAACGGGTCACAGCAGAGGGTTCCT
LOC_Os02g53620
OsAffx.12626.1.S1_at--21--251Chr02:32788529..32788553 (25 bp)
ATATATGGTGTGGTCTGGTCCCTCC
NONE
OsAffx.12626.1.S1_at--623--6831Chr02:32788480..32788504 (25 bp)
GTTTCATGGCTTGTTTAGGACTTCA
NONE
OsAffx.12626.1.S1_at--986--1351Chr02:32788456..32788480 (25 bp)
AGAGACGCTTCATAGTGCTGTGCTT
NONE
OsAffx.12626.1.S1_at--690--8691Chr02:32788438..32788462 (25 bp)
TGTGCTTTTGCAGCCCATAAGTCTG
NONE
Target Sequence 
GCACTGGTGGGCGATTCCTGAATACCAAGCAGCTCCAGCTGCAGCAACAGTCTCACACTACCTCCACCAAGACCACCACA
GACAGCCAAAATTCTTCAGGTTCAGTCCATCTACGGCTAGGTGGTGGCGCAATCGGAGATCAAACTCCATTTCCGTTCAA
AGCAATGGATTCACAAGCTAACATCAAGAGAGCTGCAGCTTCTGCTTCCACCTTCACTGTAACTTCTGCGGCACAGAAAG
ACGACGCCTTCTTCGACCGCCATGGCCACCATCTCAGTAGCTTCTCCGGCCATTTTGGCCAGGCAAGCGCACAAGGTGGC
GTCGGCAGCATGCATAACGGGTCACAGCAGAGGGTTCCTGCTATGAGATGAGATGAAGAGCAGCTTGCAAATCATCATCA
TATATGGTGTGGTCTGGTCCCTCCTTAGGCAATTCATCCTTGGCTTAAGTTTCATGGCTTGTTTAGGACTTCAGAGACGC
TTCATAGTGCTGTGCTTTTGCAGCCCATAAGTCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12626.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis