Browse Element(s) Details


Os.50205.1.S1_at

Description gb:AK121450.1
DB_XREF= gi:37991073
TID=Os.50205.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50205 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023142G12, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023142G12, full insert sequence.
FL= gb:AK121450.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3153011/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g31480Os.5094.1.S2_at11/115+18232290..18237299methyltransferase family protein, expressed
LOC_Os05g31480Os.5094.1.S1_at11/115+18232290..18237299methyltransferase family protein, expressed
LOC_Os05g31490Os.47990.1.S1_at11/115+18238050..18242835Golgi transport complex protein, putative, expressed
LOC_Os05g31500NANA5+18244813..18245133hypothetical protein
LOC_Os05g31510OsAffx.26201.1.S1_at6/115+18247628..18250537transposon protein, putative, Mutator sub-class
LOC_Os05g31520OsAffx.4491.1.S1_at9/115+18253197..18256563hypothetical protein
LOC_Os05g31530Os.50205.1.S1_at11/115+18260243..18265939NB-ARC domain containing protein, expressed
LOC_Os05g31530Os.50205.1.S1_x_at11/115+18260243..18265939NB-ARC domain containing protein, expressed
LOC_Os05g31540NANA5+18270068..18270400retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g31550OsAffx.14901.1.S1_at11/115+18273181..18276849NB-ARC domain containing protein
LOC_Os05g31560NANA5+18281364..18281823retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50205.1.S1_at--442--51Chr05:18265720..18265744 (25 bp)
ATTGTTGGCAACAGGCTCCTTCATG
LOC_Os05g31530
Os.50205.1.S1_at--399--8511Chr05:18265725..18265749 (25 bp)
TGGCAACAGGCTCCTTCATGCAGAA
LOC_Os05g31530
Os.50205.1.S1_at--585--2491Chr05:18265729..18265753 (25 bp)
AACAGGCTCCTTCATGCAGAATGTG
LOC_Os05g31530
Os.50205.1.S1_at--65--8331Chr05:18265733..18265757 (25 bp)
GGCTCCTTCATGCAGAATGTGTCTT
LOC_Os05g31530
Os.50205.1.S1_at--87--3531Chr05:18265741..18265765 (25 bp)
CATGCAGAATGTGTCTTAAAGTGAA
LOC_Os05g31530
Os.50205.1.S1_at--999--3251Chr05:18265792..18265816 (25 bp)
CAACGTATATATGAACCTGCTGGGA
LOC_Os05g31530
Os.50205.1.S1_at--270--6891Chr05:18265796..18265820 (25 bp)
GTATATATGAACCTGCTGGGATCAA
LOC_Os05g31530
Os.50205.1.S1_at--445--8431Chr05:18265821..18265845 (25 bp)
GGCCTCTTTGTAACAGTGTACAAAC
LOC_Os05g31530
Os.50205.1.S1_at--213--1111Chr05:18265835..18265859 (25 bp)
AGTGTACAAACTGTGATATACTGAT
LOC_Os05g31530
Os.50205.1.S1_at--324--5211Chr05:18265905..18265929 (25 bp)
GAATTCCCTCTTTCTAAATATACTG
LOC_Os05g31530
Os.50205.1.S1_at--714--10651Chr05:18265908..18265932 (25 bp)
TTCCCTCTTTCTAAATATACTGTGA
LOC_Os05g31530
Target Sequence 
ATTGTTGGCAACAGGCTCCTTCATGCAGAATGTGTCTTAAAGTGAATGAAATGCATTGCATTTCTCTGCTCGCAACGTAT
ATATGAACCTGCTGGGATCAAGGCCTCTTTGTAACAGTGTACAAACTGTGATATACTGATATTGATTGGAGTTCCACTGC
TCAACACTGATTGTGTTATTTCGAGGAATTCCCTCTTTCTAAATATACTGTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50205.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis