Browse Element(s) Details


Os.5094.1.S1_at

Description gb:AK102118.1
DB_XREF= gi:32987327
TID=Os.5094.1
CNT=18
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5094 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033084M04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033084M04, full insert sequence.
FL= gb:AK102118.1 gb:AK069380.1 gb:AK058210.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3148011/11methyltransferase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g31440NANA5+18202543..18208626retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g31450Os.10263.1.S1_at5/115+18210283..18211297hypothetical protein
LOC_Os05g31450OsAffx.22442.1.S1_x_at1/115+18210283..18211297hypothetical protein
LOC_Os05g31450OsAffx.21755.1.S1_x_at1/115+18210283..18211297hypothetical protein
LOC_Os05g31450OsAffx.727.1.S1_x_at1/115+18210283..18211297hypothetical protein
LOC_Os05g31450Os.51841.1.S1_x_at1/115+18210283..18211297hypothetical protein
LOC_Os05g31460NANA5+18219662..18220369transposon protein, putative, unclassified
LOC_Os05g31470OsAffx.14900.1.S1_s_at11/115+18225723..18226844expressed protein
LOC_Os05g31470OsAffx.14900.1.S1_at11/115+18225723..18226844expressed protein
LOC_Os05g31480Os.5094.1.S2_at11/115+18232290..18237299methyltransferase family protein, expressed
LOC_Os05g31480Os.5094.1.S1_at11/115+18232290..18237299methyltransferase family protein, expressed
LOC_Os05g31490Os.47990.1.S1_at11/115+18238050..18242835Golgi transport complex protein, putative, expressed
LOC_Os05g31500NANA5+18244813..18245133hypothetical protein
LOC_Os05g31510OsAffx.26201.1.S1_at6/115+18247628..18250537transposon protein, putative, Mutator sub-class
LOC_Os05g31520OsAffx.4491.1.S1_at9/115+18253197..18256563hypothetical protein
LOC_Os05g31530Os.50205.1.S1_at11/115+18260243..18265939NB-ARC domain containing protein, expressed
LOC_Os05g31530Os.50205.1.S1_x_at11/115+18260243..18265939NB-ARC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5094.1.S1_at--284--10551Chr05:18235527..18235551 (25 bp)
TTCTTCCCCTAGACATTCATACTAT
LOC_Os05g31480
Os.5094.1.S1_at--709--9011Chr05:18235439..18235463 (25 bp)
TGCAATGATCTCTGTGTTGGCCACC
LOC_Os05g31480
Os.5094.1.S1_at--542--6611Chr05:18235424..18235448 (25 bp)
GTTGGCCACCAAGCAATTACCTTAT
LOC_Os05g31480
Os.5094.1.S1_at--992--5571Chr05:18235384..18235408 (25 bp)
GAAATGGTTCATTGTTCCCGTTGTC
LOC_Os05g31480
Os.5094.1.S1_at--41--9571Chr05:18235028..18235052 (25 bp)
TCTTCTGCGGCCCAATGGATATTTT
LOC_Os05g31480
Os.5094.1.S1_at--552--231Chr05:18235010..18235034 (25 bp)
ATATTTTGTATACTCTGCTCCACCA
LOC_Os05g31480
Os.5094.1.S1_at--117--2911Chr05:18234970..18234994 (25 bp)
AAGGACTTTCCTGTTATCTGGGAGA
LOC_Os05g31480
Os.5094.1.S1_at--968--2391Chr05:18234901..18234925 (25 bp)
AAACATGTTCAGACCGCCATATGGA
LOC_Os05g31480
Os.5094.1.S1_at--4--2671Chr05:18234874..18234898 (25 bp)
AAGCCTGAAGATCAATCCTGCCGAC
LOC_Os05g31480
Os.5094.1.S1_at--653--1991Chr05:18234813..18234837 (25 bp)
ACTCGTATGATAATTCTCCACCTTC
LOC_Os05g31480
Os.5094.1.S1_at--43--5831Chr05:18234712..18234736 (25 bp)
GACCGCCTATCATTTTATTCCAGGA
LOC_Os05g31480
Target Sequence 
TTCTTCCCCTAGACATTCATACTATGTCATTTGCTCCAAAAGATGGCCATGAGAATCAAATCCAGTTTGCTCTAGAACGT
GGGATTGGTGCAATGATCTCTGTGTTGGCCACCAAGCAATTACCTTATCCTGAAAATGCATTTGAAATGGTTCATTGTTC
CCGTTGTCGTGTTGACTGGCATGAAAATGATGGAATATTGCTGAAAGAGGTAGATCGTCTTCTGCGGCCCAATGGATATT
TTGTATACTCTGCTCCACCAGCTTATAGAAAAGATAAGGACTTTCCTGTTATCTGGGAGAAGTTAATGAATATAACAACA
TCAATGTGCTGGAAGCTTATTGCTAAACATGTTCAGACCGCCATATGGATCAAGCCTGAAGATCAATCCTGCCGACAGAA
AAATGCTGATACGAAACTACTGAATATCTGTGACTCGTATGATAATTCTCCACCTTCATGGAAAATTCCATTGATGAACT
GTGTGAGATTGAACAAAGACCAGTCAAATATGCAGAAACTGCCTTCCAGACCTGACCGCCTATCATTTTATTCCAGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5094.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis