Browse Element(s) Details


OsAffx.14900.1.S1_at

Description tigr:9633.m02873
TID=OsAffx.14900.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g3147011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g31430NANA5+18199301..18202227retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g31440NANA5+18202543..18208626retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g31450Os.10263.1.S1_at5/115+18210283..18211297hypothetical protein
LOC_Os05g31450OsAffx.22442.1.S1_x_at1/115+18210283..18211297hypothetical protein
LOC_Os05g31450OsAffx.21755.1.S1_x_at1/115+18210283..18211297hypothetical protein
LOC_Os05g31450OsAffx.727.1.S1_x_at1/115+18210283..18211297hypothetical protein
LOC_Os05g31450Os.51841.1.S1_x_at1/115+18210283..18211297hypothetical protein
LOC_Os05g31460NANA5+18219662..18220369transposon protein, putative, unclassified
LOC_Os05g31470OsAffx.14900.1.S1_s_at11/115+18225723..18226844expressed protein
LOC_Os05g31470OsAffx.14900.1.S1_at11/115+18225723..18226844expressed protein
LOC_Os05g31480Os.5094.1.S2_at11/115+18232290..18237299methyltransferase family protein, expressed
LOC_Os05g31480Os.5094.1.S1_at11/115+18232290..18237299methyltransferase family protein, expressed
LOC_Os05g31490Os.47990.1.S1_at11/115+18238050..18242835Golgi transport complex protein, putative, expressed
LOC_Os05g31500NANA5+18244813..18245133hypothetical protein
LOC_Os05g31510OsAffx.26201.1.S1_at6/115+18247628..18250537transposon protein, putative, Mutator sub-class

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14900.1.S1_at--415--3851Chr05:18226782..18226806 (25 bp)
CTGCAGCTCATGCAATAAGCTAATT
LOC_Os05g31470
OsAffx.14900.1.S1_at--1135--10431Chr05:18226759..18226783 (25 bp)
TTAGAAGCTAGCACAAAGTATACGT
LOC_Os05g31470
OsAffx.14900.1.S1_at--941--5391Chr05:18226756..18226780 (25 bp)
GAAGCTAGCACAAAGTATACGTAGT
LOC_Os05g31470
OsAffx.14900.1.S1_at--568--6891Chr05:18226742..18226766 (25 bp)
GTATACGTAGTAACAGCAATTCTCT
LOC_Os05g31470
OsAffx.14900.1.S1_at--579--7051Chr05:18226733..18226757 (25 bp)
GTAACAGCAATTCTCTGATCTCGAT
LOC_Os05g31470
OsAffx.14900.1.S1_at--321--2151Chr05:18226730..18226754 (25 bp)
ACAGCAATTCTCTGATCTCGATGGA
LOC_Os05g31470
OsAffx.14900.1.S1_at--105--1491Chr05:18226728..18226752 (25 bp)
AGCAATTCTCTGATCTCGATGGAGA
LOC_Os05g31470
OsAffx.14900.1.S1_at--254--9511Chr05:18226722..18226746 (25 bp)
TCTCTGATCTCGATGGAGAACAACA
LOC_Os05g31470
OsAffx.14900.1.S1_at--312--3791Chr05:18226714..18226738 (25 bp)
CTCGATGGAGAACAACAAGAACAGC
LOC_Os05g31470
OsAffx.14900.1.S1_at--376--9231Chr05:18226453..18226702 (25 bp)
TCCTCCAGGTTACCCGAGGTTGGAT
LOC_Os05g31470
OsAffx.14900.1.S1_at--249--9231Chr05:18226450..18226471 (22 bp)
TCCAGGTTACCCGAGGTTGGATTCG
LOC_Os05g31470
Target Sequence 
CTGCAGCTCATGCAATAAGCTAATTAGAAGCTAGCACAAAGTATACGTAGTAACAGCAATTCTCTGATCTCGATGGAGAA
CAACAAGAACAGCCAGCTGCAGCCTCCTCCAGGTTACCCGAGGTTGGATTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14900.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis