Browse Element(s) Details


Os.50208.1.S1_at

Description gb:AK120111.1
DB_XREF= gi:37989734
TID=Os.50208.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.50208 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013024I20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013024I20, full insert sequence.
FL= gb:AK120111.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1489010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g14840OsAffx.3245.1.S1_at11/113+8066289..8067785CsPK3, putative, expressed
LOC_Os03g14850OsAffx.12866.1.S1_at11/113+8075592..8077817SRF-type transcription factor family protein, expressed
LOC_Os03g14850Os.18922.1.S1_at11/113+8075592..8077817SRF-type transcription factor family protein, expressed
LOC_Os03g14860NANA3+8080625..8081983G-patch domain containing protein, expressed
LOC_Os03g14880Os.49994.1.S1_at11/113+8085393..8087434expressed protein
LOC_Os03g14880Os.49994.1.S2_at11/113+8085393..8087434expressed protein
LOC_Os03g14890OsAffx.12867.1.S1_s_at11/113+8091183..8096795expressed protein
LOC_Os03g14890OsAffx.12867.1.S1_at11/113+8091183..8096795expressed protein
LOC_Os03g14890Os.50208.1.S1_at10/113+8091183..8096795expressed protein
LOC_Os03g14900Os.21188.1.A1_at11/113+8101302..8105056NB-ARC domain containing protein, expressed
LOC_Os03g14900Os.12301.1.S1_at1/113+8101302..8105056NB-ARC domain containing protein, expressed
LOC_Os03g14910Os.11804.1.S1_at11/113+8109465..8113280Tryptophan/tyrosine permease family protein, expressed
LOC_Os03g14920OsAffx.12868.1.S1_at11/113+8114067..8115327hypothetical protein
LOC_Os03g14920OsAffx.22904.1.S1_at1/113+8114067..8115327hypothetical protein
LOC_Os03g14920OsAffx.22904.1.S1_x_at1/113+8114067..8115327hypothetical protein
LOC_Os03g14930NANA3+8120974..8122371retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50208.1.S1_at--33--411Chr03:8091334..8091358 (25 bp)
ATCATCCTTTGATTACAGAAGTTTT
LOC_Os03g14890
Os.50208.1.S1_at--477--10391Chr03:8091313..8091337 (25 bp)
TTTTGAGTTTTGATCTTCCCCAGTA
LOC_Os03g14890
Os.50208.1.S1_at--733--10631Chr03:8091298..8091322 (25 bp)
TTCCCCAGTAGCACAACTATCTGAG
LOC_Os03g14890
Os.50208.1.S1_at--951--3691Chr03:8091282..8091306 (25 bp)
CTATCTGAGTCTGATCATTTCTGGT
LOC_Os03g14890
Os.50208.1.S1_at--802--9451Chr03:8091263..8091287 (25 bp)
TCTGGTATCTTAAATATGGTGTAGC
LOC_Os03g14890
Os.50208.1.S1_at--1094--791Chr03:8091248..8091272 (25 bp)
ATGGTGTAGCATGGAAGGACCTAAT
LOC_Os03g14890
Os.50208.1.S1_at--761--931Chr03:8091233..8091257 (25 bp)
AGGACCTAATGTTACTTTGTTCAGC
LOC_Os03g14890
Os.50208.1.S1_at--526--6751Chr03:8091223..8091247 (25 bp)
GTTACTTTGTTCAGCTGAAGGCCAT
LOC_Os03g14890
Os.50208.1.S1_at--1053--4731Chr03:8091210..8091234 (25 bp)
GCTGAAGGCCATTAAGATACATGCA
LOC_Os03g14890
Os.50208.1.S1_at--121--6471Chr03:8091196..8091219 (24 bp)
GATACATGCATACATCACAATTTTC
LOC_Os03g14890
Os.50208.1.S1_at--168--3571NONE
CATCACAATTTTCATATCACTGCTT
NONE
Target Sequence 
ATCATCCTTTGATTACAGAAGTTTTGAGTTTTGATCTTCCCCAGTAGCACAACTATCTGAGTCTGATCATTTCTGGTATC
TTAAATATGGTGTAGCATGGAAGGACCTAATGTTACTTTGTTCAGCTGAAGGCCATTAAGATACATGCATACATCACAAT
TTTCATATCACTGCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50208.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis