Browse Element(s) Details


Os.50226.1.S1_at

Description gb:AK120200.1
DB_XREF= gi:37989823
TID=Os.50226.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50226 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013037G15, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013037G15, full insert sequence.
FL= gb:AK120200.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1862011/11pentatricopeptide, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g18590Os.7592.1.S1_at11/113+10379825..10383326malonyl CoA-acyl carrier protein transacylase containing protein, expressed
LOC_Os03g18600Os.55612.1.S1_at9/113+10397692..10398864Streptomyces cyclase/dehydrase family protein, expressed
LOC_Os03g18620Os.50226.1.S1_at11/113+10407958..10412760pentatricopeptide, putative, expressed
LOC_Os03g18630Os.49177.1.S1_at11/113+10416745..10419483Leucine Rich Repeat family protein, expressed
LOC_Os03g18630OsAffx.12923.1.S1_x_at11/113+10416745..10419483Leucine Rich Repeat family protein, expressed
LOC_Os03g18640OsAffx.12924.1.S1_at11/113+10422283..10425052Multicopper oxidase family protein, expressed
LOC_Os03g18650OsAffx.13097.1.S1_s_at11/113+10429868..10430538hypothetical protein
LOC_Os03g18660OsAffx.3270.1.S1_at11/113+10431282..10431818hypothetical protein
LOC_Os03g18670OsAffx.12925.1.S1_at11/113+10432606..10434090hypothetical protein
LOC_Os03g18680Os.51152.1.S1_at11/113+10436015..10438673expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006810biological_processtransport
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50226.1.S1_at--874--2331Chr03:10412259..10412283 (25 bp)
AAAGAAATATGGTACCGCCCTGATA
LOC_Os03g18620
Os.50226.1.S1_at--677--9891Chr03:10412286..10412310 (25 bp)
TACTTCTACCGGGACATGCTGTATA
LOC_Os03g18620
Os.50226.1.S1_at--715--811Chr03:10412398..10412422 (25 bp)
ATGGTGACATCGTTAGAGCCTTCTG
LOC_Os03g18620
Os.50226.1.S1_at--873--6351Chr03:10412424..10412448 (25 bp)
GATGCCGGCTTGATTGATCTGGCAA
LOC_Os03g18620
Os.50226.1.S1_at--881--9831Chr03:10412516..10412540 (25 bp)
TAAAGGCCTGGTTCCATATCCTGAC
LOC_Os03g18620
Os.50226.1.S1_at--120--6551Chr03:10412562..10412586 (25 bp)
GATTTTCTAGAACTCTTCCCTGATA
LOC_Os03g18620
Os.50226.1.S1_at--211--6891Chr03:10412592..10412616 (25 bp)
GTATATGACCCTCCAGATAGCCTGT
LOC_Os03g18620
Os.50226.1.S1_at--113--10411Chr03:10412640..10412664 (25 bp)
TTTTGATCAGTTACACATCCCTACC
LOC_Os03g18620
Os.50226.1.S1_at--777--3651Chr03:10412664..10412688 (25 bp)
CTTCATTTCTGAGGTCTTTCTGGTA
LOC_Os03g18620
Os.50226.1.S1_at--868--191Chr03:10412718..10412742 (25 bp)
ATTTCTCAGCTAATGCTTTGCTCTC
LOC_Os03g18620
Os.50226.1.S1_at--134--10291Chr03:10412734..10412758 (25 bp)
TTTGCTCTCTGCATTGTGCACTAGC
LOC_Os03g18620
Target Sequence 
AAAGAAATATGGTACCGCCCTGATATGTACTTCTACCGGGACATGCTGTATATGCTAGCTAGNGAACAAGAAGATTGAGG
AGACAAGGCAGGTCTGGGCAGATCTTAAGTCTGAAGACGTGTTATTTGATCAGCACACCTATGGTGACATCGTTAGAGCC
TTCTGTGATGCCGGCTTGATTGATCTGGCAATGGAATTTTACGAAGACATGAGANGCTCTCCAGATCCACCCCTCTCATT
GCCGTTCCGGGTTATACTTAAAGGCCTGGTTCCATATCCTGACCTAAGGGAGAAGATAAAGCAAGATTTTCTAGAACTCT
TCCCTGATATGATNGTATATGACCCTCCAGATAGCCTGTCAGATNTGGACGATGAATTCAAATTTTGATCAGTTACACAT
CCCTACCTTCATTTCTGAGGTCTTTCTGGTAATACCATGAAAAGGTACACACGAAGTTCAATTTCTCAGCTAATGCTTTG
CTCTCTGCATTGTGCACTAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50226.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis