Browse Element(s) Details


Os.50228.1.S1_at

Description gb:AK120208.1
DB_XREF= gi:37989831
TID=Os.50228.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50228 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013038K24, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013038K24, full insert sequence.
FL= gb:AK120208.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1594010/11receptor like protein kinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g15890Os.41248.4.S1_x_at1/117+9228610..9233991retrotransposon protein, putative, Ty1-copia subclass
LOC_Os07g15900NANA7+9239530..9241129hypothetical protein
LOC_Os07g15910OsAffx.22387.1.S1_at11/117+9244892..9246132hypothetical protein
LOC_Os07g15920OsAffx.28469.1.S1_at11/117+9248139..9248588hypothetical protein
LOC_Os07g15930OsAffx.28470.1.S1_at11/117+9250697..9254014Legume lectins beta domain containing protein, expressed
LOC_Os07g15940Os.50228.1.S1_at10/117+9258849..9261135receptor like protein kinase, putative, expressed
LOC_Os07g15950OsAffx.22386.1.S1_x_at11/117+9264516..9265010hypothetical protein
LOC_Os07g15960Os.10626.4.A1_s_at11/117+9280669..9281292hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0016301molecular_functionkinase activity
GO:0030246molecular_functioncarbohydrate binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50228.1.S1_at--88--10791Chr07:9259392..9259416 (25 bp)
TTGTGGCCAAAGACCCATCAAGCAA
LOC_Os07g15940
Os.50228.1.S1_at--19--2271Chr07:9259351..9259375 (25 bp)
AAATCCTACTTGTTGACTGGGTTAT
LOC_Os07g15940
Os.50228.1.S1_at--1086--8171Chr07:9259310..9259334 (25 bp)
GGAACGCTCATCGAAACGGTGGACA
LOC_Os07g15940
Os.50228.1.S1_at--96--3711Chr07:9259235..9259259 (25 bp)
CTAGGACTGTTGTGTGCACATCCAT
LOC_Os07g15940
Os.50228.1.S1_at--1097--2951Chr07:9259200..9259224 (25 bp)
AAGGCCAAGCATGCGTCAAATCGTA
LOC_Os07g15940
Os.50228.1.S1_at--907--2231Chr07:9259183..9259207 (25 bp)
AAATCGTACAATACCTCGACGGTGA
LOC_Os07g15940
Os.50228.1.S1_at--529--7371Chr07:9259162..9259186 (25 bp)
GTGACATGGCATTACCTGAGCAGAT
LOC_Os07g15940
Os.50228.1.S1_at--898--1291NONE
AGATGCCAACAGACCGAATCTCCAA
NONE
Os.50228.1.S1_at--997--8011Chr07:9259110..9259134 (25 bp)
GGAGGGCTTAGACCAGTATATTCAA
LOC_Os07g15940
Os.50228.1.S1_at--328--1091Chr07:9259083..9259107 (25 bp)
AGGGCCTCAATCAACAATTCCAGTC
LOC_Os07g15940
Os.50228.1.S1_at--424--8511Chr07:9259047..9259071 (25 bp)
TGGCACAATGTCTAACCTTTCAGGT
LOC_Os07g15940
Target Sequence 
TTGTGGCCAAAGACCCATCAAGCAAAGCAGAGAAGGTCATCAAATCCTACTTGTTGACTGGGTTATTCACCATTGGAAAA
ATGGAACGCTCATCGAAACGGTGGACAAAAGACTCGAGGGAAACCATGACACTGATGAAGCAATCCTAGTGCTGAAGCTA
GGACTGTTGTGTGCACATCCATTTAGCAATGCAAGGCCAAGCATGCGTCAAATCGTACAATACCTCGACGGTGACATGGC
ATTACCTGAGCAGATGCCAACAGACCGAATCTCCAATCAGACGGAGGGCTTAGACCAGTATATTCAAACAGGGCCTCAAT
CAACAATTCCAGTCAATGCAAGCTATGGCACAATGTCTAACCTTTCAGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50228.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis