Browse Element(s) Details


Os.50230.1.S1_at

Description gb:AK120224.1
DB_XREF= gi:37989847
TID=Os.50230.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50230 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013041O14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013041O14, full insert sequence.
FL= gb:AK120224.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3111010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g31080OsAffx.19096.1.S1_at5/1111+17586311..17587241hypothetical protein
LOC_Os11g31090OsAffx.31237.1.S1_at11/1111+17590335..17592644transferase family protein, putative, expressed
LOC_Os11g31100OsAffx.19098.1.S1_at11/1111+17594109..17600157GRAS family transcription factor containing protein
LOC_Os11g31100OsAffx.19097.1.S1_at9/1111+17594109..17600157GRAS family transcription factor containing protein
LOC_Os11g31110Os.50230.1.S1_at10/1111+17604256..17610469expressed protein
LOC_Os11g31120OsAffx.7263.1.S1_at9/1111+17611808..17612866hypothetical protein
LOC_Os11g31130OsAffx.19099.1.S1_at11/1111+17618358..17619124hypothetical protein
LOC_Os11g31140NANA11+17625308..17627089hypothetical protein
LOC_Os11g31150OsAffx.19100.2.S1_at10/1111+17629607..17630502hypothetical protein
LOC_Os11g31150OsAffx.17914.1.S1_x_at1/1111+17629607..17630502hypothetical protein
LOC_Os11g31150OsAffx.1436.1.S1_x_at1/1111+17629607..17630502hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50230.1.S1_at--784--5031NONE
GCACCTGTTTGGTGGGACGGCCAAT
NONE
Os.50230.1.S1_at--1095--5131Chr11:17604773..17604797 (25 bp)
GCAAAGCCCCATTCCTAGAGATGTG
LOC_Os11g31110
Os.50230.1.S1_at--778--10091Chr11:17604733..17604757 (25 bp)
TATGGAGTCCGGTTATCAAACACAG
LOC_Os11g31110
Os.50230.1.S1_at--225--5991Chr11:17604695..17604719 (25 bp)
GAGACACCTCATGTCATACTGTAGG
LOC_Os11g31110
Os.50230.1.S1_at--722--1011Chr11:17604649..17604673 (25 bp)
AGGTACCGTGTTCTTCCTTCATACA
LOC_Os11g31110
Os.50230.1.S1_at--672--5271Chr11:17604599..17604623 (25 bp)
GAATGAGGCTCGTCAAGTCATGCTC
LOC_Os11g31110
Os.50230.1.S1_at--113--6811Chr11:17604560..17604584 (25 bp)
GTTTTGCACTACCACTTACCTAAGG
LOC_Os11g31110
Os.50230.1.S1_at--1079--851Chr11:17604500..17604524 (25 bp)
ATGGCCATGACGCTAATTTTGTAAG
LOC_Os11g31110
Os.50230.1.S1_at--761--10031Chr11:17604403..17604427 (25 bp)
TAGACGTCGTTTCAAGGCATGCCTT
LOC_Os11g31110
Os.50230.1.S1_at--404--4991Chr11:17604387..17604411 (25 bp)
GCATGCCTTGTTTCGAATCTTGTTG
LOC_Os11g31110
Os.50230.1.S1_at--764--6791Chr11:17604357..17604381 (25 bp)
GTTATACATCGCTGTTGTTGCTAAT
LOC_Os11g31110
Target Sequence 
GCACCTGTTTGGTGGGACGGCCAATGGCAAAGCCCCATTCCTAGAGATGTGAGGAGATTGCTGGAATATGGAGTCCGGTT
ATCAAACACAGGAGAGGTGGATGAGAGACACCTCATGTCATACTGTAGGTCAAGGAAAGATCATGTGAAAAGGTACCGTG
TTCTTCCTTCATACAATAGTTCAATGCAACTGTAGAATGCGAATGAGGCTCGTCAAGTCATGCTCTTTTGGAGAGCGCAG
TTTTGCACTACCACTTACCTAAGGAGCTAGTATAGGTTAGGATGGTTAGGCTTTTTGAAATGGCCATGACGCTAATTTTG
TAAGGTGGTTCCAATTTTGGTGGGCTGTATCATGTATACCTGGAACTGTCATGTAGGAAAGCTATAGAAAATAGGCTAGA
CGTCGTTTCAAGGCATGCCTTGTTTCGAATCTTGTTGTTATTGTTATACATCGCTGTTGTTGCTAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50230.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis