Browse Element(s) Details


Os.50254.2.S1_x_at

Description gb:AK120344.1
DB_XREF= gi:37989967
TID=Os.50254.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50254 (NCBI UniGene Cluster)
UG_TITLE=Telomerase reverse transcriptase (TERT) mRNA, complete cds
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013063G13, full insert sequence.
FL= gb:AK120344.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1954910/11Telomerase reverse transcriptase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g19510OsAffx.7642.1.S1_at9/1112+11335451..11337728hypothetical protein
LOC_Os12g19519NANA12+11340954..11341806NA
LOC_Os12g19530Os.35409.1.A1_s_at11/1112+11347206..11354572ATP-binding region, ATPase-like domain-containing protein, putative, expressed
LOC_Os12g19530Os.17276.1.S1_at10/1112+11347206..11354572ATP-binding region, ATPase-like domain-containing protein, putative, expressed
LOC_Os12g19530Os.35409.1.A1_a_at9/1112+11347206..11354572ATP-binding region, ATPase-like domain-containing protein, putative, expressed
LOC_Os12g19549Os.50254.1.S1_at11/1112+11359970..11376085Telomerase reverse transcriptase, putative, expressed
LOC_Os12g19549Os.50254.2.S1_x_at10/1112+11359970..11376085Telomerase reverse transcriptase, putative, expressed
LOC_Os12g19549Os.33742.1.S1_at1/1112+11359970..11376085Telomerase reverse transcriptase, putative, expressed
LOC_Os12g19570NANA12+11389294..11390320retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
GO:0007004biological_processtelomerase-dependent telomere maintenance
GO:0003720molecular_functiontelomerase activity
GO:0003721molecular_functiontelomeric template RNA reverse transcriptase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50254.2.S1_x_at--258--2271Chr12:11369472..11369496 (25 bp)
AAATCACCTTGTTCAGTGTTCGACA
LOC_Os12g19549
Os.50254.2.S1_x_at--724--7671Chr12:11369443..11369467 (25 bp)
GGGTTCCCAGGGTTTATCTTGTCAT
LOC_Os12g19549
Os.50254.2.S1_x_at--868--10151Chr12:11369429..11369453 (25 bp)
TATCTTGTCATTACAGCCTGTCAGA
LOC_Os12g19549
Os.50254.2.S1_x_at--1082--1671Chr12:11369415..11369439 (25 bp)
AGCCTGTCAGAAGTCCAGTACCAAT
LOC_Os12g19549
Os.50254.2.S1_x_at--1084--6951Chr12:11369398..11369422 (25 bp)
GTACCAATCTACATGTCCCCAAGTT
LOC_Os12g19549
Os.50254.2.S1_x_at--473--8411Chr12:11369372..11369396 (25 bp)
GGCCCTCCAGTTACTTACATCTGAA
LOC_Os12g19549
Os.50254.2.S1_x_at--22--9891NONE
TACATCTGAATGTGCTGTTGGCTGC
NONE
Os.50254.2.S1_x_at--617--2891Chr12:11363728..11363751 (24 bp)
AAGGTGGCACCTGATGTGACCAAGA
LOC_Os12g19549
Os.50254.2.S1_x_at--203--8231Chr12:11363698..11363722 (25 bp)
GGCAAGGCACATTATCCACCTGGAG
LOC_Os12g19549
Os.50254.2.S1_x_at--570--5411Chr12:11363635..11363659 (25 bp)
GAAGCGTATAGCACCCATCAACAAG
LOC_Os12g19549
Os.50254.2.S1_x_at--182--6971Chr12:11363611..11363635 (25 bp)
GTAGCTTCTTTTGTTTGGGCAGTGC
LOC_Os12g19549
Target Sequence 
AAATCACCTTGTTCAGTGTTCGACATAAGGGGTTCCCAGGGTTTATCTTGTCATTACAGCCTGTCAGAAGTCCAGTACCA
ATCTACATGTCCCCAAGTTGGGCCCTCCAGTTACTTACATCTGAATGTGCTGTTGGCTGCCCAAATCAATTAAAAATCTC
ATAAGGAATTCTAAACGTTGCCAATATAAGAAATTATTTCTGAAGCATTGTTCTGTCAAGTGTAAGGTGGCACCTGATGT
GACCAAGAATGATGGCAAGGCACATTATCCACCTGGAGGAAAAGCAGCATATTATGATCGATCATTTTCTCGATTGGAAG
CGTATAGCACCCATCAACAAGTAGCTTCTTTTGTTTGGGCAGTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50254.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis