Browse Element(s) Details


Os.50270.1.S1_at

Description gb:AK066515.1
DB_XREF= gi:32976533
TID=Os.50270.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50270 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013069D10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013069D10, full insert sequence.
FL= gb:AK066515.1 gb:AK120451.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g3931011/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g39260Os.49908.1.S1_at11/1111+22874214..22877337RGH2A, putative
LOC_Os11g39270NANA11+22878808..22884814retrotransposon protein, putative, Ty1-copia subclass
LOC_Os11g39280Os.56221.1.S1_at11/1111+22888587..22890384expressed protein
LOC_Os11g39290Os.47902.1.S1_at9/1111+22893148..22896449Leucine Rich Repeat family protein, expressed
LOC_Os11g39300OsAffx.31383.1.S1_at9/1111+22897537..22900222hypothetical protein
LOC_Os11g39310Os.50270.1.S1_at11/1111+22902130..22905847NB-ARC domain containing protein, expressed
LOC_Os11g39320Os.49419.1.S1_at11/1111+22906779..22911705NB-ARC domain containing protein, expressed
LOC_Os11g39330NANA11+22914301..22917314NB-ARC domain containing protein
LOC_Os11g39350Os.53674.1.S1_at11/1111+22920527..22925366expressed protein
LOC_Os11g39360Os.52546.1.S1_at10/1111+22925937..22928601pentatricopeptide, putative, expressed
LOC_Os11g39370Os.9292.1.S1_at11/1111+22929909..22935436BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
GO:0009613biological_processresponse to pest, pathogen or parasite
GO:0009626biological_processhypersensitive response
GO:0000166molecular_functionnucleotide binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50270.1.S1_at--1005--1291Chr11:22902764..22902788 (25 bp)
AGATGACGACAGACGCAGTTAGCAA
LOC_Os11g39310
Os.50270.1.S1_at--29--5851Chr11:22902711..22902735 (25 bp)
GACCTTTTCATCAAATGGCATCAGA
LOC_Os11g39310
Os.50270.1.S1_at--425--4511Chr11:22902602..22902626 (25 bp)
GCCGATGAGGCCACACTGAGGACAA
LOC_Os11g39310
Os.50270.1.S1_at--909--2911Chr11:22902363..22902387 (25 bp)
AAGGAGGACGGCCTGCACTGCTTCA
LOC_Os11g39310
Os.50270.1.S1_at--1037--1971Chr11:22902347..22902371 (25 bp)
ACTGCTTCAGCTTCGATTAGGATTT
LOC_Os11g39310
Os.50270.1.S1_at--1036--5391Chr11:22902307..22902331 (25 bp)
GAAGCTTCTGTACTTTTGCTGGCAA
LOC_Os11g39310
Os.50270.1.S1_at--364--9831Chr11:22902276..22902300 (25 bp)
TAAAACTCTTGCATCTCATGGTCGC
LOC_Os11g39310
Os.50270.1.S1_at--86--9351Chr11:22902255..22902279 (25 bp)
TCGCTTCTGTATTGCCGTTGGCCAG
LOC_Os11g39310
Os.50270.1.S1_at--1159--4491Chr11:22902242..22902266 (25 bp)
GCCGTTGGCCAGTTTGTATCTGTAC
LOC_Os11g39310
Os.50270.1.S1_at--450--4731Chr11:22902176..22902200 (25 bp)
GCTGTTGGCCACTTGTATCTGTAAG
LOC_Os11g39310
Os.50270.1.S1_at--102--7071Chr11:22902156..22902180 (25 bp)
GTAAGTTCTATTTCTGTGTCCATGT
LOC_Os11g39310
Target Sequence 
AGATGACGACAGACGCAGTTAGCAAAGAGGTTGCCAAGCATAGCAACACTATTGACCTTTTCATCAAATGGCATCAGAAA
AGATGTTATTCGGTCAAGTGACAAGAAGGAAGAGAGNGCAACAGGATCCGAAGTCGATGCAGCGGAGGATGGTGCTCAAG
CGGCCGATGAGGCCACACTGAGGACAACAATACAGGTTCAAAGCGAGATTGAAGTTGAAGGTGAAACAGAGAGCCATACT
TAACTCTAAGCAACCAAGGTCCCAAGGAAATGGGGATGATGTCCTCCTCTCCTGACTCCTAAGGGGACAGAGTTAATAAA
GGAGGACGGCCTGCACTGCTTCAGCTTCGATTAGGATTTAGGAGCAGACAAGAAGAAGCTTCTGTACTTTTGCTGGCAAA
TGGCATAAAACTCTTGCATCTCATGGTCGCTTCTGTATTGCCGTTGGCCAGTTTGTATCTGTACATTATCTAAAAAGTTT
GTATCTGTAATTTCTGTGTGTAGTTGCTGTTGGCCACTTGTATCTGTAAGTTCTATTTCTGTGTCCATGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50270.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis