Browse Element(s) Details


Os.50286.1.S1_at

Description gb:AK120541.1
DB_XREF= gi:37990164
TID=Os.50286.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50286 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013129G20, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013129G20, full insert sequence.
FL= gb:AK120541.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1412011/11BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g14059Os.13546.1.S1_at11/112+7676811..768750660S ribosomal protein L11-1, putative, expressed
LOC_Os02g14059Os.28346.3.S1_x_at1/112+7676811..768750660S ribosomal protein L11-1, putative, expressed
LOC_Os02g14080NANA2+7689510..7689752hypothetical protein
LOC_Os02g14090OsAffx.11451.6.S1_s_at11/112+7690303..7692133Reticuline oxidase precursor, putative, expressed
LOC_Os02g14090OsAffx.11451.4.S1_x_at1/112+7690303..7692133Reticuline oxidase precursor, putative, expressed
LOC_Os02g14100OsAffx.26082.3.A1_at5/112+7695473..7700292retrotransposon protein, putative, unclassified
LOC_Os02g14110Os.4167.1.S1_at10/112+7706618..7711164Aspartate aminotransferase, mitochondrial precursor, putative, expressed
LOC_Os02g14120Os.50286.1.S1_at11/112+7711096..7715738BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed
LOC_Os02g14130Os.22834.1.S1_at11/112+7718959..7723686Shaggy-related protein kinase eta, putative, expressed
LOC_Os02g14140OsAffx.24242.4.S1_x_at2/112+7733271..7733966hypothetical protein
LOC_Os02g14140OsAffx.24242.5.S1_x_at1/112+7733271..7733966hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50286.1.S1_at--148--10211Chr02:7711623..7711647 (25 bp)
TATTCATTTGATTTCGCCGAGTTGG
LOC_Os02g14120
Os.50286.1.S1_at--655--1111Chr02:7711598..7711622 (25 bp)
AGTGTTCTGTTGACGTAATTCTGCA
LOC_Os02g14120
Os.50286.1.S1_at--402--171Chr02:7711554..7711578 (25 bp)
ATTTTGCGTCCCAAGATGTCGGAAG
LOC_Os02g14120
Os.50286.1.S1_at--528--7191Chr02:7711537..7711561 (25 bp)
GTCGGAAGTCCTTAATGCCCTTGAA
LOC_Os02g14120
Os.50286.1.S1_at--150--10751Chr02:7711517..7711541 (25 bp)
TTGAAGCTAATGTCACCCTGCCAGA
LOC_Os02g14120
Os.50286.1.S1_at--385--6171Chr02:7711454..7711478 (25 bp)
GAGGATCTTGCAGTTTCTCAGTAAG
LOC_Os02g14120
Os.50286.1.S1_at--343--1671Chr02:7711391..7711415 (25 bp)
AGCCAATTGAGCTATCTGGTCCCAG
LOC_Os02g14120
Os.50286.1.S1_at--203--4731Chr02:7711258..7711282 (25 bp)
GCTGGTGTTGCAAATGCCTCACGAT
LOC_Os02g14120
Os.50286.1.S1_at--324--3331Chr02:7711239..7711263 (25 bp)
CACGATCCAATCTCTAACTGCTAGG
LOC_Os02g14120
Os.50286.1.S1_at--165--10051Chr02:7711214..7711238 (25 bp)
TAGATCGGTCATTTCTGGTCGTGTT
LOC_Os02g14120
Os.50286.1.S1_at--821--6911Chr02:7711162..7711186 (25 bp)
GTATGCTACCCATCCTACAATATGT
LOC_Os02g14120
Target Sequence 
TATTCATTTGATTTCGCCGAGTTGGAGTGTTCTGTTGACGTAATTCTGCAATGCACTCAGACCAATCCCATTTTGCGTCC
CAAGATGTCGGAAGTCCTTAATGCCCTTGAAGCTAATGTCACCCTGCCAGAGAACGGCATCGACTTGAATAGAGAAGTGC
CTCCCTATGGAGGATCTTGCAGTTTCTCAGTAAGGCATGAGGATCCTCATGATTCATCATCCTTCATAATAGAGCCAATT
GAGCTATCTGGTCCCAGATGATCACAATTGTACATCAGGGGGGAGAACCACAAACAAAAGGATGACAATTGTACAAAAAC
GTGTATAGTCTGGATGTAGTTTTACTTGGAATCTGCAAGGAGTTTGCTGGTGTTGCAAATGCCTCACGATCCAATCTCTA
ACTGCTAGGTAGATCGGTCATTTCTGGTCGTGTTGGCGTATGCACTGTACAGTGCAAATCAGTATGCTACCCATCCTACA
ATATGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50286.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis